Phylogenetic classification of Quinella hydrogenases using the
Phylogenetic approaches to microbial community classification
... example, phylogenetic information in the case of ...predictions. Phylogenetic measures did not yield improved accuracy relative to non-phylogenetic measures: for example, the widely used unweighted ...
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Phylogenetic classification of short environmental DNA fragments
... It is defined as FPrate i ¼ FP i = P j6¼i P j . Measuring the accuracy on synthetic metagenome In a first experiment, the accuracy of the complete algorithm was evaluated on a synthetic metagenome consisting of fragments ...
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Towards a new classification of Leguminosae: Naming clades using non-Linnaean phylogenetic nomenclature
... of phylogenetic relationships in the family ...of Phylogenetic Nomenclature or ...of phylogenetic no- menclature applied to several well recognized and well-supported, informally named papilionoid ...
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A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes
... current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic ...Leotiomycetes classification is frequently poorly congruent with the ...
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Phylogenetic classification of yeasts and related taxa within Pucciniomycotina
... robust phylogenetic analysis utilising several independent DNA loci or whole-genome comparisons ...that using the LSU rRNA gene alone is not sufficient to resolve the high-level phylogenetic ...
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RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
... species using phylogenetically close ...the classification algorithm will assign the fragment to the same or a close clade-level for which a model (in this case an RAI profile) is avail- ...the ...
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Accurate phylogenetic classification of DNA fragments based onsequence composition
... rRNA phylogenetic markers indicated a Thiothrix-like species to be relatively well represented ...by using the scaffolding information provided by read pairs, ...
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Phylogenetic classification of Escherichia coliO157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms
... Results: High-throughput 454 sequencing of pooled STEC O157 strain DNAs from human clinical cases (n = 91) and cattle (n = 102) identified 16,218 putative polymorphisms. From those, 178 were selected primarily within ...
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Rapid phylogenetic and functional classification of short genomic fragments with signature peptides
... largest phylogenetic distances, thousands of 10-mer peptide exact matches can be found between pairs of bacterial ...a phylogenetic reference tree based on the RNA polymerase ...contains. Using both ...
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Phylogenetic classification supports a Northeastern Amazonian Proto-Tupí-Guaraní Homeland
... We close this introduction with a caveat: note that in this paper we talk about the homeland for a proto-language, not a historical people or population, and the dispersal 1 of languages, not peoples. This choice is ...
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Expression analysis of LIM gene family in poplar, toward an updated phylogenetic classification
... CZ and phloem/bark. The accumulation of PtWLIM2a and PtPLIM2d in DX was only slightly higher in tension wood compared to opposite wood and the other PtLIM genes did not exhibit any tension wood preferential up-reg- ...
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Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications
... sory enzymes to assist xylanolytic and pectinolytic enzymes in gaining access to their site of action during biomass conversion. Their ability to release ferulic acid and other hydroxycinnamic acids from plant biomass ...
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Phylogeny and phylogenetic classification of the tyrant flycatchers, cotingas, manakins, and their allies (Aves: Tyrannides)
... One of the reasons why Linnean taxonomy is viewed as being too unstable to continue using is that taxo- nomic informatics systems are inadequate for mapping the groups and their names in one classification against ...
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Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus
... 40 3 The number of base substitutions per site from averaging all sequence pairs between class I and class II sub-genotypes is shown. Analysis was conducted using the Maximum Composite Likelihood model (Tamura et ...
142
Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus
... 2.6. Pilot tree and individual genotype trees for rapid preliminary identification After performing the analyses described above and identifying the main NDV genotypes, a smaller (pilot) dataset of class II sequences (n ...
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A Phylogenetic Classification of Polemoniaceae
... Flowers arranged in terminal or axillary cymes, solitary or 2-3 in number, on short peduncles 1-1.5 em long; calyx shortly campanulate, 4.5-7.0 nun long (in fruit somewhat larger), lobes[r] ...
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A Phylogenetic Classification of the Inocybaceae
... Hibbett, D. S., M. Binder, J. F. Bischoff, M. Blackwell, P. F. Cannon, O. E. Eriksson, S. Huhndorf, T. James, P. M. Kirk, R. Lücking, H. T. Lumbsch, F. Lutzoni, P. B. Matheny, D. J. McLaughlin, M. J. Powell, S. Redhead, ...
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Phylogenetic classification of life
... duced.) Haploid nuclei or cells, representing the haploid phase of the haplo-diploid life cycle, are not necessarily gametes: many grow by mitosis and become adults capable not of sex bu[r] ...
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Towards a phylogenetic classification of the Myxomycetes
... proposed classification.—The proposed classification represents a compromise between the multi-step architecture of phylogenetic cladograms and the number of levels in a taxonomic hierarchy, which ...
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Phylogenetic classification of the world’s tropical forests
... Phylogenetic classification of the world’s tropical forests J. W. Ferry Slik a,1 , Janet Franklin b,1 , Víctor Arroyo-Rodríguez c , Richard Field d , Salomon Aguilar e , Nikolay Aguirre f , Jorge Ahumada g ...
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