Population screen with selected SSR markers
Genetic variation, population structure and linkage disequilibrium in Switchgrass with ISSR, SCoT and EST-SSR markers
... and population structure can aid association ...variation, population struc- ture, and extent of LD using 51 markers including 16 ISSRs, 20 SCoTs, and 15 ...and population structure may guide ...
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Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
... 22 SSR and 384 SNP loci, we showed that both the marker systems are efficient for the evaluation of genetic diversity and population struc- ture, and microsatellites turned out to be well suited for the ...
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Genetic analysis and identification of SSR markers associated with rice blast disease in a BCF backcross population.
... repeat markers linked with rice blast disease. A backcross population (BC 2 F 1 ), derived from crossing MR264 and Pongsu Seribu 2 (PS2), was developed using marker-assisted backcross ...microsatellite ...
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Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
... The genus Vitis contains about 60 species, or more strictly ecospecies, since there are no genetic barriers within the genus and the species are inter-fertile. They have a primarily temperate zone distribution, occurring ...
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Use of SSR and retrotransposon-based markers to interpret the population structure of native grapevines from Southern Italy
... available, SSR and retrotransposons-based markers result to be the most valuable for cultivars and biotypes distinc- ...30 SSR, four REMAP and one IRAP markers to assess their genetic ...
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EST-SSR: A New Class of Genetic Markers in Cotton
... products. Selected PCR products were cloned and sequenced to further confirm the presence of the SSR in the EST markers (Table 2, ...randomly selected EST-SSR primer pairs (MGHES-25, ...
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Molecular characterization of Turkish onion germplasm using SSR markers
... the population-level genetic diversity of these Turkish onion accessions based on molecular markers for the first time and to assess the implications of the study for future breeding and genebank management ...
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Segregation Correlation of SSR Markers and Flower Traits in Aneuploid Tobacco
... Based on the linkage analysis of the F 2 population of hexaploid tobacco, the 42 loci isolated were subject to Chi-square test to probe the segregation of the progeny. The resulting segregation was 1:1 to 2:1. The ...
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Genetic diversity and population structure analysis of Kala bhat (Glycine max (L.) Merrill) genotypes using SSR markers
... intermixing. Population structure divided the soybean genotypes into six different ...the population, 66% variance among individual and 22% variance was observed within ...
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Genetic Diversity, Population Structure, Parentage Analysis, and Construction of Core Collections in the French Apple Germplasm Based on SSR Markers
... of SSR Markers Reliable and polymorphic SSR markers are essential to study the genetic diversity and structure of such a ...using SSR markers have already been ...different ...
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Simple sequence repeat (SSR) markers linked to drought tolerant traits in selected Sudanese rice (Oryza sativa L.) genotypes
... the population, a total of 18 SSR markers were successfully amplified resulting in a total of 569 alleles with 13 to 113 alleles per primer with an average of ...the SSR markers grouped ...
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Identification of Linked Markers for Delayed Fruit Ripening in Tomato Using Simple Sequence Repeat (SSR) Markers
... Molecular analysis of tomato has advantage of having relatively small genome size and simple diploid genetics with wide variety of molecular markers (0.9 pg/haploid genome; Arumuganathan and Earle, 1991) thousands ...
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Genetic diversity in Cucurbita pepo landraces revealed by RAPD and SSR markers
... molecular markers is beneficial in the genetic study of landraces with different agro-ecological ...(SSR) markers. Of the 36 and 55 primers tested, 9 RAPD and 10 SSR primers were ...
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Effective Procedure for Development of EST SSR Markers Using cDNA Library
... as markers, PCR was performed on each of the designed EST-SSR primer sets and seventeen primer sets with high repro- ducibility as EST-SSR markers were ...
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Diversity in Cucumber Genotypes Based on Morphological Traits and SSR Molecular Markers
... randomly selected and data on ten quantitative traits were recorded (including root length, plumule length, number of primary branches per plant, number of days from three-leaf to six-leaf stage, the number of ...
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Construction of a Molecular Linkage Map of Pearl Millet Using SSR Markers
... For pearl millet production in the semi-arid tropics, Sclerospora graminicola is a major biotic constraint causes Downy mildew. The pathogen is heterothallic and frequent recombination leads to evolution of new virulent ...
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Genetic Linkage Map Construction in Pearl Millet Using SSR Markers
... the markers that were mapped are mapped to same linkage group in the consensus maps of Rajaram et al 18 and Qi et al 16 , except for swapping of some marker orders within some blocks on a few linkage ...the ...
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RESEARCH NOTENew SSR Markers for Use in Cotton (Gossypium spp.) Improvement
... ssr markers, also known as microsatellite dna markers, are very useful for saturation of the large and complex upland cotton (Gossypium hirsutum ...identify ssr-containing target regions and ...
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Transferability of heterologous SSR Markers to cotton genotypes
... Thus, extent of transferability of cross genera SSR markers to cotton depends on their number and nature of repeat motifs. Chandra (2011) reported tranferability of Medicago truncatula EST-SSR ...
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Development and applications of EST-SSR markers in sorghum
... the markers and these were more strongly saturated towards at the telomeric ends of each ...fourteen markers per ...adjacent markers, if we consider only covered bins to calculate the distance ...
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