query sequence
Div BLAST : diversification of sequence search results
... a query from a database of ...the query sequence and that are typically highly similar to each ...Most sequence analysis tasks in bioinformatics require an exploratory approach, where the ...
23
Parallel Two Master Method to Improve BLAST Algorithm’s Performance
... database sequence also ...than Query Segmentation Technique. In Database Segmentation Technique, Query Sequence is loaded to all the processors, a search tree is created for the query ...
7
Parallel model and scheduling technique for spaces complexity and synchronization problems in sequences alignment
... and query sequences between workers sustain in the reduction of communication between workers ...a query sequence and block of the reference sequence, and when the workers send results back to ...
10
Performance Optimization of the Database Sequencing Applications
... each sequence consists of different repeated code, we introduce our first similarity function which is called ”Frequency ...a sequence is close to its frequency in another sequence, this is a good ...
8
blastlab-genomic cladistics
... Figure 7 shows the actual nucleotide comparisons between your unknown or “query” sequence and the most common sequence belonging to Gallus gallus. The results are tedious at best but there is a quick ...
12
FASH: A web application for nucleotides sequence search
... Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid ...a query sequence and a long text-sequence ...
6
FPGA Implementation of Wu- Manber Algorithm for BLASTN DNA Sequence Matching
... the query sequence and the subject sequence), the inputs to this stage are strings of DNA bases, which typically uses the alphabet {A, C, G, ...two sequence fragments with equal length whose ...
9
CRISPR-offinder: a CRISPR guide RNA design and off-target searching tool for user-defined protospacer adjacent motif
... DNA query sequence, the pipeline of CRISPR-offinder program first fetches all the possible regions in the length range of 15 to 25 nts (nucleotides), with PAM either on the 5' or 3' ...
9
Structural, Functional Insights of Alsin Protein Using Homology Modeling and Docking Studies
... of sequence that was modeled. Since sequence similarity of alsin sequence is less that 30% for homology modeling Multitemplate homology modeling is used ...between query sequence and ...
7
PNGases : a diverse family of enzymes related by function rather than catalytic mechanism : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in the Institute of Molecular BioSciences, Massey University, Palmerston North
... as query sequence resulted in 100 hits from 54 different organisms with the following taxonomic distribution: 10 plants, 34 fungi, 7 bacteria and 3 ...
340
HCudaBLAST: an implementation of BLAST on Hadoop and Cuda
... parallelised sequence similar- ity—a Hadoop MapReducable basic local alignment search ...the query file and all the files which belong to the single virtual partition in every ...each query in single ...
8
Identification of a non purple tartrate resistant acid phosphatase: an evolutionary link to Ser/Thr protein phosphatases?
... (ACP5) sequence (accession number NP_001602; unless stated otherwise accession codes are NCBI reference sequence numbers) was used to perform a five iteration PSI-BLAST search of the non-redundant database ...
8
ABSTRACT : This paper proposes the dynamic database creation and query form based on user requirements. In
... of query forms in advance, there are still user queries that cannot be satisfied by any one of query ...of query forms, how to let users find an appropriate and desired query form would be ...
7
QueRIE : Personalized Query Recommendation
... The database systems store large amount of data. When the number of users who use the database increases, it is critical to access large volume of data from the database systems. The users who lack familiarity with the ...
5
Molecular Diversity And Interrelationship Amongst The Various Phyla Based On 16s And 12 Srrna Analysis
... In Biological science, diversity is the term which can indicate the differences between genes and as consequences of these differences in genes variability in species occurs. The evolutionary history of thousands of ...
8
Bibliographic Information Retrieval System using FORTRAN
... The 'query answer frequency' table will help the query maker to make his search expression more useful and accurate for a better response to his query. This can be used as a 'short display method' by ...
31
Occurrence of Planolites from the Nagarjuna Sagar Area, Northwestern Cuddapah Basin
... The assignment of this sequence to the Srisailam Quartzite Formation of the N allamalai Group by earlier workers is however open to query in the light of the presence of Planolites, w[r] ...
8
Deep, multi stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease related pathways
... additional sequence provided by our contigs allowed more of these unknown sequences to be more firmly ...glabrata sequence provisionally accessioned by other studies, with homolo- gous genes in other ...
10
Bacterial genospecies that are not ecologically coherent : population genomics of Rhizobium leguminosarum
... Our study organism is the soil bacterium Rhizobium legumi- nosarum, which is well known as a nitrogen-fixing symbiont in root nodules of legume plants and has a history of molecular diversity studies stretching back ...
15
BIOPROSPECTING FOR LIPASE PRODUCING MICROORGANISMS
... consensus sequence of the 16S rDNA gene was generated from forward and reverse sequence data using aligner ...gene sequence was used to carry out BLAST with the database of the NCBI genebank ...
5