rRNA genes
Sequence Diversity of Neisseria meningitidis 16S rRNA Genes and Use of 16S rRNA Gene Sequencing as a Molecular Subtyping Tool
... 16S rRNA genes and genetic relationship among meningococcal strains of different ...16S rRNA or capsule genes may be responsible for the presence of strains of a particular serogroup on ...
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Identification of nine sequence types of the 16S rRNA genes of Campylobacter jejuni subsp. jejuni isolated from broilers
... 16S rRNA genes, whereas E. coli has seven rRNA genomic loci ...16S rRNA gene sequences of the respective 47 strains included in the study were identical as judged from the sequence raw data, ...
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Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure specific endonuclease cleavage
... Intergenic region. We examined the potential of the CFLP method for differentiating bacteria. In order to provide the greatest utility, a bacterium-typing method should be able to differentiate both species and strains. ...
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Internal Transcribed Spacer Regions of rRNA Genes of Pneumocystis carinii from Monkeys
... 18S rRNA genes of all 14 speci- mens were found to be identical, and only one base, the second base, of the first 14 bases of the 26S rRNA gene was found to be variable among the 14 ...
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In and out of the rRNA genes: characterization of Pokey elements in the sequenced Daphnia genome
... Pokey elements are members of the piggyBac super- family of DNA-mediated TEs that insert into TTAA tar- get sequences [3,6]. This element was first identified in the cladoceran crustacean Daphnia pulex, and is now known ...
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Two different 16S rRNA genes in a mycobacterial strain
... Evidence for two 16S rRNA genes in three strains of M. terrae and in Mycobacterium strain “X.” Mycobacterium strain “X” was isolated from the sputum of one human immunode- ficiency virus-positive woman ...
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Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp nov and genomic group 21038 (Borrelia andersonii sp nov ) isolates
... 23S rRNA genes, 5 9 to 3 9 ...23S rRNA gene should be ...rrlB genes of isolates 21038 and 19857 contain ...deduced rRNA gene ...
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Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections
... of rRNA phylogeny to the identification of bac- teria, whether the rDNA is amplified directly from clinical samples or is isolated from bacteria in pure cultures, always allows a given (single) sequence to be ...
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Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov.
... predicted genes, 5,008 were protein-coding genes, and 51 were ...Nine rRNA genes (three 16S rRNA, three 23S rRNA and three 5S rRNA) and 42 predicted tRNA genes were ...
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Identification of Clinical Isolates of Indole Positive and Indole Negative Klebsiella spp
... The rpoB gene, which encodes the bacterial RNA polymer- ase  -subunit, has been used as a signature for bacterial iden- tification and as a locus for phylogenetic analysis (31). In 2005, Drancourt and Raoult proposed ...
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Molecular Analysis of Non O1, Non O139 Vibrio choleraeAssociated with an Unusual Upsurge in the Incidence of Cholera Like Disease in Calcutta, India
... tcpA genes and for the genes representing the heat-labile toxin, heat-stable toxin, and verotoxin of Esch- erichia coli and the various variants of these ...of rRNA genes and of other ...
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The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes
... the genes on the same strand, all of those generated in this study con- tained the standard 36 elements: 12 PCGs (atp6, cytb, cox1–3, nad1–6 and nad4L), 22 tRNA genes and two rRNA genes ...
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Discrimination of Mycobacterium abscessus subsp massiliense from Mycobacterium abscessus subsp abscessus in Clinical Isolates by Multiplex PCR
... We have developed a simple, cost-effective discriminative multi- plex PCR to differentiate M. abscessus subsp. massiliense from M. abscessus subsp. abscessus and from other RGM. The multiplex PCR expanded upon the ...
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Molecular characterisation of the tick Rhipicephalus microplus in Malaysia: new insights into the cryptic diversity and distinct genetic assemblages throughout the world
... 16S rRNA sequences comprised 625 bp and 399 bp, ...16S rRNA were concatenated to yield a total length of 1024 ...16S rRNA genes is shown in Additional file 1: Figure ...16S rRNA ...
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Identification of two organohalide-respiring Dehalococcoidia associated to different dechlorination activities in PCB-impacted marine sediments
... 16S rRNA genes were quantified through qPCR using a StepOne ™ Real-Time PCR System (Applied Biosystems, Monza, Italy) and StepOne soft- ware v ...16S rRNA gene primer pairs, respectively), and ...
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Mitochondrial DNA Markers for PCR Based Phylogenetic Analysis of Ark Shells
... oxidase subunit I COI, 16S ribosomal RNA 16S rRNA, cytochrome b Cyt b, and 12S ribosomal RNA 12S rRNA genes between Scapharca, Anadara, and Tegillarca species were investigated using PCR[r] ...
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Discrimination among thermophilic Campylobacter species by polymerase chain reaction amplification of 23S rRNA gene fragments
... Genes for 16S rRNA 16S rDNA have often been used as target sequences in these PCR assays for the identification of fastidious bacteria 5, 11, including Campylobacter spp.. rRNA genes hav[r] ...
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Reclassification of Phenotypically Identified Staphylococcus intermedius Strains
... There have been six species of coagulase-positive staphylo- cocci other than Staphylococcus aureus, S. intermedius, S. schle- iferi subsp. coagulans, S. hyicus, S. lutrae, S. delphini, and S. pseudintermedius (6, 9). ...
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Novel Molecular Method for Identification of Streptococcus pneumoniae Applicable to Clinical Microbiology and 16S rRNA Sequence Based Microbiome Studies
... of genes and phenotypic traits previously considered specific for ...16S rRNA genes of a collection of 634 streptococcal strains, identified by multilocus sequence anal- ysis, we detected a cytosine ...
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The Mitochondrial Genome of the Hemichordate Balanoglossus carnosus and the Evolution of Deuterostome Mitochondria
... the genes encoding 13 protein, 22 tRNA, and 2 rRNA genes is essentially the same as in vertebrates, indicating that the vertebrate and hemichordate mitochondrial gene arrangement is close to that of ...
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