Sequence-based phylogenetic analysis
Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
... The analysis of each of the two MLST data sets based on the 75 genome-sequenced strains combined with all strains in the two respective MLST databases identified eight CCs according to the Aarhus scheme and ...
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A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis
... Russulaceae, based on morphological char- acters (Singer 1986) and this hypothesis is also suggested by independent sequence data from the mitochondrial small subunit rRNA gene (Hibbett & Donoghue ...
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A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data
... Our phylogenetic analyses imply that the most basal extant scleractinians are azooxanthellate solitary corals from deep-water, their divergence predating that of the robust and complex ...
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Phylogenetic analysis of eight sudanese camel contagious ecthyma viruses based on B2L gene sequence
... previous phylogenetic analysis based on the B2L gene of PPV, PCPV and ORFV strains are usually char- acterized by a certain level of variability, while PVNZ and BPSV strains may possess 100 % ...
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Sequence and Phylogenetic Analysis of SSU rRNA Gene of Five Microsporidia
... Two phylogenetic trees based on SSU rRNA sequences had been constructed by using Neighbor-Joining of Phylip software and UPGMA of ...by analysis of phylogenetic relationship, length, G?C ...
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Evolutionary Relationship of Wheat Protein Disulphide Isomerase (PDI) Gene Promoter Sequence Based on Phylogenetic Analysis
... Keywords: Protein Disulfide Isomerase (PDI) Promoter; Wheat; Phylogenetic Analysis 1. Introduction Wheat is adapted to temperate regions of the world and was one of the first crops to be domesticated. ...
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Molecular Phylogenetic Analysis of Indonesian Fusarium Isolates from Different Lifestyles, based on ITS Sequence Data
... the phylogenetic tree generated from ITS sequences (Cheng et ...nucleotide sequence variation from the ITS region is not sufficient in differentiating the cryptic species within these species ...
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Title: Multiple Sequence Alignment Based Method for Construction of Phylogenetic Trees
... Bioinformatics, Sequence Alignment, Phylogeny, Biotech data, Data Mining, NCBI data ...and analysis of data to support scientific research in multiple areas such as evolutionary studies, microbial genome ...
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Target Sequence Capture of Nuclear-Encoded Genes for Phylogenetic Analysis in Ferns
... transcriptome- based work (Rothfels et ...bead- based size- selection protocol to achieve modal fragment lengths of approximately 600 ...BaseSpace Sequence Hub ...
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The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
... phylogeny based on complete chloroplast genomes In a landmark article that included data from multiple sources, the Grass Phylogeny Working Group [13] exam- ined relationships among grasses using a large and ...
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Phylogenetic Study of Curvularia on Sorghum from Indonesia Based on ITS rDNA Sequence
... Abstract Seven species of Curvularia were recorded from Indonesia, including species that pathogen to sorghum (Sorghum bicolor). The present study aims to determine four isolates of Curvularia isolated from sorghum in ...
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Citrate Synthase Gene Sequence: a New Tool for Phylogenetic Analysis and Identification ofEhrlichia
... same analysis of similarity and phy- logenetic relationships was also performed for the deduced amino acid se- quences of gltA and the 16S rRNA gene ...PCR-RFLP analysis. Based upon the alignment ...
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groESL Sequence Determination, Phylogenetic Analysis, and Species Differentiation for Viridans Group Streptococci
... groESL sequence-based species identification, the groES, spacer, and groEL sequences from clinical isolates were determined to identify intraspecies ...acid sequence similarities among reference ...
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PHYLOGENETIC ANALYSIS
... protein sequence changes: Is it better to retain information about each character when determining a tree ...matrix based on empirical data a more accurate re- flection of evolutionary change than a matrix ...
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Phylogenetic Analysis of Salmonella, Shigella, and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
... Phylogenetic analysis of gyrB genes from clinical ...the phylogenetic tree for these species based on the gyrB gene ...same sequence in each group are ...rRNA sequence ...
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Mitochondrial DNA Sequence Variation and Phylogenetic Analysis in Japanese Individuals from Miyazaki Prefecture
... used. Sequence comparison revealed the existence of 90 diŠerent haplotypes in 120 variable positions, and of these 82, were unique, 6 were observed twice and 2 were observed three ...of sequence variations ...
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A SNP based phylogenetic analysis of Corynebacterium diphtheriae in Malaysia
... Multiple sequence alignments for tox and DtxR genes were constructed and analysed by Clustal Omega ...SNP analysis in our study by comparing the SNPs in core genome and pan-genome which includes the full ...
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Structural and Phylogenetic Analysis of Adenovirus Hexons by Use of High-Resolution X-Ray Crystallographic, Molecular Modeling, and Sequence-Based Methods
... alignment based on the newly refined crystal structures of human adenovirus types 2 (Ad2) and Ad5 ...parsimony-based phylogenetic trees are consistent and reveal evolutionary relationships between ...
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Genetic heterogeneity and phylogenetic divergence among nostoc sp , based on cpcb cpca gene sequence
... 1997).The sequence of Nostoc ...identified based on sequence comparison using BLASTN as well as gene prediction analysis using GeneMark ...
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Phylogenetic analyses of Chlamydia psittaci strains from birds based on 16S rRNA gene sequence
... specific sequence in order to identify pathogenic agents such as chlamydiae is important because of the possi- bility of identification of the organisms directly from clinical specimens without the fastidious ...
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