Sequencing and phylogenetic analysis
PHYLOGENETIC ANALYSIS OF FRESHWATER MUSSEL BY Corbicula regularis 18S rRNA GENE SEQUENCING
... Isolated bivalve DNA was used for phylogenetic analysis. PCR amplification was carried out with reaction mixture of 50 µl containing was 25 µl of PCR master mix, 1 µl of template DNA (diluted to 10-50 ...
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Cloning, Sequencing and Phylogenetic Analysis of Stn Gene of Salmonella Typhimurium
... gene, phylogenetic relation was deduced between different serovars of Salmonella ...bioinformatics analysis of Stn protein, which exhibited two major domains and one amino acid substitution at 609 ...
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Partial sequencing and phylogenetic analysis of Soybean mosaic virus isolated in Ukraine
... and phylogenetic analysis have been ...cultivars. Phylogenetic analysis of se- quences of the coat protein coding region and P1 coding region revealed strong genetic relationships between ...
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Sequencing and phylogenetic analysis of the gp51 gene from Korean bovine leukemia virus isolates
... molecular analysis of the BLV env gp51 gene was conducted using recent worldwide BLV ...and phylogenetic analyses of partial 444-nt fragment sequences and complete gp51 sequences of BLV revealed eight ...
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Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia
... genome sequencing (WGS) approach for HMPV from a small number of HMPV positive clinical samples collected at Kilifi County Hospital in Kilifi, Kenya and University Teaching Hospital in Lusaka, ...by ...
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Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
... We performed multiple analyses using both constant size and Bayesian skyline 335. demographic models, in combination with either a strict molecular clock or a relaxed 336.[r] ...
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Complete genome sequencing and phylogenetic analysis of dengue type 1 virus isolated from Jeddah, Saudi Arabia
... Arabia. Phylogenetic analysis of DENV-1-Jeddah-1-2011 isolate sequence, Asian geno- type, did not show any genetic relations with the other DENV-1 genotypes including the America/Africa geno- type which was ...
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Exploring the utility of cross laboratory RAD sequencing datasets for phylogenetic analysis
... the analysis of the ten tel- eost species were predicted to be genic, providing sup- port for previous findings of a the bias of SbfI RAD loci towards genic regions, which is likely to facilitate relation- ship ...
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Phylogenetic Analysis of Non O157 Shiga Toxin Producing Escherichia coli Strains by Whole Genome Sequencing
... H11 strains. Furthermore, five strains sharing the H2 antigen clus- tered together regardless of O serotypes. Genomic analysis re- vealed that O111:NM strain DEC12C carried fliC for the H2 gene. To further explore ...
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Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole Genome Sequencing Data
... cgMLST analysis and analyzed along- side 179 previously lineage-defined ...cgMLST analysis successfully assigned 58 isolates to major lineages, and the results were consistent with those obtained by ...
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Phylogenetic Analysis in Iran, 2018
... gene. Phylogenetic relationships of avian poxviruses are usually analyzed using the 4b core protein-coding gene sequences with molecular weights of ...and sequencing was performed for one isolate as ...
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Phylogenetic Analysis of Polyomavirus BK Sequences
... a phylogenetic whole-genome approach to examine the pattern of diversity and evolutionary relationships between 45 BKV strains isolated from multiple clinical ...This analysis supports the classification of ...
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A primer to molecular phylogenetic analysis in plants
... generation sequencing techniques have resulted in the accumulation of whole plastid genome sequen- ces which are readily accessible via the GenBank database (Moore et ...Their analysis using 61 protein ...
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Molecular Phylogenetic Analysis of Chemosymbiotic Solemyidae and Thyasiridae
... In order to invade and adapt to deep-sea environments, shallow-water organisms have to acquire tolerance to high hydrostatic pressure, low water temperature, toxic methane and hydrogen sulfide, and feeding strategies not ...
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Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
... High-throughput sequencing of 16S rRNA gene amplicons has revolutionized the capacity and depth of microbial community ...Several sequencing platforms are available, but most phylogenetic studies are ...
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Extraction of DNA from murine fecal pellets for downstream phylogenetic microbiota analysis by next-generation sequencing
... Downstream Phylogenetic Microbiota Analysis by Next-generation Sequencing Elien Eeckhout 1, 2, 3 and Andy Wullaert 1, 2, 3, * 1 Department of Internal Medicine, Ghent University, Ghent, Belgium; 2 ...
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PHYLOGENETIC RELATIONSHIPS OF ONION ( L.) CULTIVARS BY Allium cepa SEQUENCING OF THE ITS REGION
... of phylogenetic trees method was used to construct neighbor-joining tree (Saitou & Nei, 1987) and the p- distance algorithm, respectively processed by the program Molecular Evolutionary Genetics ...
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Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
... Sequence assembly and alignment are described in and followed Whittall et al. [42]. An analysis of interspecific recombination was conducted using RDP(Recombination Detection Program) v. 3.27 [43]. Rather than ...
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PHYLOGENETIC ANALYSIS
... PHYLIP is a command-line program and does not have a point-and-click inter- face, as programs like PAUP do. The documentation is well written and very com- prehensive, and the interface is straightforward. A program ...
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Data for phylogenetic analysis
... logical analysis of a series of nested chromosomal inversions in Hawaiian fruit ...detailed phylogenetic tree for approximately 103 fly species – a tree than has largely been validated based on DNA seqence ...
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