Simple sequence repeats analysis
Analysis of simple sequence repeats in rice bean (Vigna umbellata) using an SSR-enriched library
... Dinucleotide repeats were predominant with an absolute proportion of ...homolog analysis, 1595 flanking sequences were similar to mung bean and 500 to common bean genomic ...
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A genome wide analysis of simple sequence repeats in maize and the development of polymorphism markers from next generation sequence data
... SSRs were widely concerned and used as an ideal tool for deciphering genetic variability, not only due to the abundance within a genome, the random occurrence, but also the high degree of polymorphisms [27]. The ...
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Analysis of Simple Sequence Repeats Information from Floral Expressed Sequence Tags Resources of Papaya (Carica papaya L )
... diversity analysis, its cross transferability analysis among Carica and its related genera, and identification of sex specific markers among female, her- maphrodite and male plants of various papaya ...
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Marker-assisted sex differentiation in date palm using simple sequence repeats
... containing simple sequence repeats (SSRs) are a valuable tool for genetic ...coordinate analysis (PCoA) of 12 male samples with 7 female Khasab cultivars produced 2 autonomous groups of males ...
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In Silico Exploration of Cannabis sativa L Genome for Simple Sequence Repeats (SSRs)
... The analysis using the MISA program revealed a total of 407,491 SSRs (from mono-nucleotide to deca-nucleotide) in the hemp genome and 15,655 SSRs in the ...transcriptome. Analysis of the frequency and ...
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Vibrio cholerae Strain Typing and Phylogeny Study Based on Simple Sequence Repeats
... antisera. Simple sequence repeats (SSR), also termed VNTR (for variable number of tandem repeats), provide a source of high genomic polymorphism used in bacterial ...fragment-size ...
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Characterization of maize genotypes for genetic diversity on the basis of inter simple sequence repeats.
... The cluster analysis based on the UPGMA method was used to group genotypes based on similarity. Genotypes located in different clusters should be considered for genetic enhancement programs or hybrid breeding ...
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Distribution of new satellites and simple sequence repeats in annual and perennial Glycine species
... we analysis the three new repeat sequences on many Glycine species by ...FISH analysis would reveal heterochromatin Fig. 3 FISH analysis of SBRS2 and 45S rDNA on ...
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Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)
... Any sequence was considered as an SSR where a repeat motif of one to six nucleotides in length was repeated at least five times for dinucleotide, trinucleotide, tetranucleotide and pentanucleotide ...BLAST ...
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Vibrio vulnificus Typing Based on Simple Sequence Repeats: Insights into the Biotype 3 Group
... In conclusion, a high level of genetic diversity is important for bacterial adaptation, especially in pathogenic bacteria. SSR provide a mechanism of site-specific hypermutation along the bacterial chromosome, with the ...
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Deciphering the genetic identity and fidelity of banana through inter simple sequence repeats fingerprinting
... E-mail: surabhigk@gmail. com ABSTRACT Bananas and plantains are a major staple food and export product in many countries. The success and pace of progress of crop-improvement program depend to a large extent on the ...
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Genetic diversity and population structure analysis in Perilla frutescens from Northern areas of China based on simple sequence repeats.
... comprehensive analysis of genetic diversity, genetic relationship, and population structure among these Chinese Perilla resources, the basic genetic knowledge of Chinese Perilla has been obtained and can be used ...
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Abstracts Vibrio vulnificus typing based on simple sequence repeats: Insights into the biotype 3 group
... pathogenic. Simple sequence repeats (SSR) provide a source of high- level genomic polymorphism used in bacterial ...Genetic analysis of the SSR data resulted in the clear distinction of ...
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CHARACTERIZATION OF ELITE MAIZE INBRED LINES FOR DROUGHT TOLERANCE USING SIMPLE SEQUENCE REPEATS MARKERS
... This is to confirm the amplification and determine the background effect and primer dimers. The bands were scored for presence (1) or absence (0) of polymorphism for each marker on the basis of size in comparison with ...
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Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines
... An analysis of zebra finch ESTs identified greater than six hundred previously undescribed microsatellites (EST- ...genome sequence indicated that their homo- logues are approximately evenly dispersed ...
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Fourteen simple sequence repeats newly developed for population genetic studies in Prosopis africana (Fabaceae–Mimosoideae)
... Conclusion All our 14 newly developed markers were highly poly- morphic and no null alleles were detected. Using these SRRs, it was possible to quantify the genetic structure of two populations. These SSRs are very ...
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Keragaman Genetik Inbrida Jagung QPM Dan Provit-A Berdasarkan Marka SSRs (Simple Sequence Repeats)
... hybrid. Simple sequence repeats (SSR) have been extensively utilized as genetic markers to study the genetic diversity, cultivar identification, and gene ...Cluster analysis divided the 20 ...
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Using Molecular Sizes of Simple Sequence Repeats vs. Discrete Binned Data in Assessing Probability of Ancestry
... compared our results using molecular sizes to those from using binned data (Berry et al. 2002). Both data sets included a number of hybrids and their inbred parents along with numerous other inbred lines, many of which ...
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Genetic diversity in tomato (Solanum lycopersicum L.) genotypes revealed by simple sequence repeats (SSR) markers
... diversity analysis using twenty SSR ...Cluster analysis based on Jaccard’s similarity coefficient using the unweighted pair-group method with arithmetic mean (UPGMA) revealed 2 distinct clusters, A and B, ...
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Mining of single nucleotide polymorphism (SNP) and simple sequence repeats (SSRs) from EST tropical fruits
... expressed sequence tags (ESTs) sequence from tropical ...ESTs sequence from year after ...and simple sequence repeat (SSR) from EST tropical ...genetic analysis for wide ...
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