The whole transcriptome across different conditions in
Whole-exome and whole-transcriptome sequencing of canine mammary gland tumors
... following conditions: total allele depth > 10, reference allele depth >= 90% for genotypes (0/0), reference allele depth >= 40%, reference allele depth < 60% for genotypes (0/1), and alter- native allele depth >= ...
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Whole genome transcriptome polymorphisms in Arabidopsis thaliana
... natural transcriptome variation between closely related ...[36]. Whole genome tiling arrays cover the entire genome with high density oligonucleotide probes, independ- ent of any prior knowledge of ...
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Whole genome transcriptome polymorphisms in Arabidopsis thaliana
... natural transcriptome variation between closely related ...[36]. Whole genome tiling arrays cover the entire genome with high density oligonucleotide probes, independ- ent of any prior knowledge of ...
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A comparative assessment of clinical whole exome and transcriptome profiling across sequencing centers: implications for precision cancer medicine
... concordant across sequencing centers that have substantial experience in the technological requirements for preparing, sequencing and annotating DNA and RNA from human ...
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Portfolio Performance and Strategic Asset Allocation Across Different Economic Conditions
... by Different Asset Classes As discussed earlier, the first task in our analysis is to measure the improvement in portfolio performance induced by the sequential addition of the test assets (corporate bonds, small ...
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Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq
... The length distribution of all 1222 asRNAs is shown in Fig 2A. As can be seen, most asR- NAs are rather short. More than 70% have lengths between 50 nt and 250 nt, and 86% are shorter than 300 nt. The median size of all ...
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Analysis of Whole Transcriptome Sequencing Data: Workflow and Software
... The transcriptome is the entire set of RNA transcripts in a given cell for a specific developmental stage or physio- logical condition ...the transcriptome is necessary for interpreting the functional ...
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Comparison of phi29-based whole genome amplification and whole transcriptome amplification in dengue virus
... After testing primer efficiency and conditions for the RT pro- cess, the GV2 platform was applied to the viral cDNA. In Fig. 4 A, gel electrophoresis showed the size of GV2 product from 20 ng dengue genome ...
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Whole blood transcriptome correlates with treatment response in nasopharyngeal carcinoma
... Figure 1 Data Analysis Outline. (a) Microarray gene profiling raw data were pre-processed for quality control before analysis. First, all samples were normalized using MAS5 algorithm and only probes flagged as “ present ...
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Transcriptome and gene expression analysis of docosahexaenoic acid producer Schizochytrium sp. under different oxygen supply conditions
... fold. Different enzymatic changes indicated that complex mechanisms that regulate NADPH and acetyl-CoA gen- eration exist in Schizochytrium, which may be related to various metabolism activities of cells, such as ...
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Whole exome sequencing of a single osteosarcoma case—integrative analysis with whole transcriptome RNA-seq data
... In summary, the present case has several characteris- tics previously demonstrated in OS. The wide genomic arrangements have appeared—SNVs and small indels all over the genome and CNVs in some chromosomes; and in several ...
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Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing
... by different diagnostic assays. This study sought to establish whole transcriptome RNA sequencing as single, comprehensive, and flexible platform for AML ...file. Whole transcriptome RNA ...
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Whole genome and transcriptome amplification: practicable tools for sustainable tissue biobanking?
... Materials and methods Tissue and nucleic acid extraction Twenty frozen and 12 FFPE unrelated ccRCC specimens with known VHL mutations [ 7 ] were selected for this study to test whether WGA and WTA are applicable to ...
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Whole Transcriptome Analysis of Acinetobacter baumannii Assessed by RNA-Sequencing Reveals Different mRNA Expression Profiles in Biofilm Compared to Planktonic Cells
... Acinetobacter baumannii has emerged as a dangerous opportunistic pathogen, with many strains able to form biofilms and thus cause persistent infections. The aim of the present study was to use high-throughput sequencing ...
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Factors Controlling Soil Structure Dynamics and Carbon Sequestration Across Different Climatic and Lithological Conditions
... Microaggregation RPMf(AC2inAC3) Rate constant of fine resistant plant material mass transfer for micro aggregate formation within the macro aggregates. DPMf(AC2inAC3) Rate constant [r] ...
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The empathic brain and its dysfunction in psychiatric populations: implications for intervention across different clinical conditions
... Several studies have examined behavioral and autonomic responses of children with autism who look at adults depicting facial emotional expressions (see [141] for a critical review). While most studies report that ...
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Whole transcriptome characterization of aberrant splicing events induced by lentiviral vector integrations
... very different picture appeared when LV with active LTRs was used: high levels of transcription were observed along the vector backbone, without the 5′ to 3′ decrease observed in SIN LV-transduced ...
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Whole-exome and transcriptome sequencing of refractory diffuse large B-cell lymphoma
... and transcriptome sequencing to identify the molecular background of refractory DLBCL by comparing two groups of DLBCL patients with different treatment ...
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Whole Plant Temperature Manipulation Affects Flavonoid Metabolism and the Transcriptome of Grapevine Berries
... LT conditions was not ...growing conditions ( Mori et ...LT conditions, which could supply substrates to both stilbenes and, presumably, flavonoid ...
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Computational approaches for whole-transcriptome cancer analysis based on RNA sequencing data
... To achieve systematic and statistically powered estimation of the performance of fusion-detection algorithms, depending on the number of features to control, the simulation sample size can be significantly large. For ...
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