Transcriptome profiling
Differential regulation of cytotoxicity pathway discriminating between HIV, HCV mono and co infection identified by transcriptome profiling of PBMCs
... co-infection are limited despite their easy accessibility and diagnostic utility in clinical settings. To date, only two studies have focused on transcriptomes of PBMCs from HIV, HCV mono- and co-infected individuals ...
16
Transcriptome profiling of Zymomonas mobilis under ethanol stress
... Background: High tolerance to ethanol is a desirable characteristics for ethanologenic strains used in industrial ethanol fermentation. A deeper understanding of the molecular mechanisms underlying ethanologenic strains ...
10
Transcriptome profiling reveals mechanisms for the evolution of insect seasonality
... Specific gene candidates for shifts in insect seasonal timing have been difficult to accumulate via QTL mapping because of complex genetic bases or genomic architectures between populations (Tauber et al., 1977; Feder et ...
12
Tissue-Specific Transcriptome Profiling of Plutella Xylostella Third Instar Larval Midgut
... Illumina-based transcriptome profiling technique ...comprehensive transcriptome anal- ysis covering several developmental stages and dif- ferent susceptible levels of ...
14
Transcriptome profiling confirmed correlations between symptoms and transcriptional changes in RDV infected rice and revealed nucleolus as a possible target of RDV manipulation
... Viruses are obligate intracellular pathogens. They hijack host functions, divert host resources and suppress host defense responses to achieve successful infection [1]. These involve an array of interactions with ...
10
Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
... thus we performed transcriptome sequencing and com- parative analysis on three samples, including Foxiang2 (FBH), Fudingbaicha (MBH) and hybrid sterile flowers (ZDH). The aim was to analyze the differentially ...
10
Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress
... ABSTRACT It is widely accepted that bacterial endophytes actively colonize plants, interact with their host, and frequently show beneficial effects on plant growth and health. However, the mechanisms of plant-endophyte ...
11
Transcriptome profiling of 6 OHDA model of Parkinson’s disease
... the transcriptome analysis performed in a rat model of PD generated via the injection of 6-OHDA showed that most genes develop a nonspecific response that was associated primarily with the introduction of the ...
8
Transcriptome Profiling Analysis of Bovine Vaginal Epithelial Cell Response to an Isolated Lactobacillus Strain
... the transcriptome profiling results showed that incubation of BVECs with Lactobacillus also activates protein processing in the endoplasmic reticulum pathway ...
13
Conjunctival transcriptome profiling of Solomon Islanders with active trachoma in the absence of Chlamydia trachomatis infection
... transcriptional profiling studies of adenoviral infec- tion of human epithelial cells indicate dominance of anti- viral and type-one interferon-associated pathways ...
8
Single cell transcriptome profiling revealed differences in gene expression during oocyte maturation in Haimen white goats.
... the transcriptome. Single cell transcriptome sequencing is an important method for investigating the differential gene expression between different oocytes that facilitates the determination of variation ...
12
Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection
... protein ligase, and 1 unnamed protein (categorized into GO biological process, defense response to virus, DRV) in both guts and whole body. Six genes were confirmed to be significantly upregulated in guts samples (Fig. ...
12
Dual Transcriptome Profiling of Leishmania Infected Human Macrophages Reveals Distinct Reprogramming Signatures
... global transcriptome of the parasite were similar to the pattern observed in its host cell, suggesting that much of the reprogram- ming that occurs as the parasites transform into intracellular forms generally ...
16
CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes.
... a transcriptome profiling technique, on libraries cultured with and without CCL2 and observed a consistent up-regulation of hypoxia related genes, suggesting that CCL2 induces a hypoxic-like response in ...
9
PubMedCentral-PMC4838574.pdf
... Using transcriptome profiling, the present study uncovered vast gene expression differences in the early postnatal HR versus LR limbic brain, including changes in genes involved in cellular ...
31
Investigating the genetics of thermal tolerance and adaptation to temperature amongst populations of Australian barramundi (Lates calcarifer)
... Discussion 4.4.1 Adaptation of the cellular stress response in Lates calcarifer 4.4.2 The metabolic and growth response 60 60 62 CHAPTER 5.0 NEXT-GENERATION TRANSCRIPTOME PROFILING REVEA[r] ...
157
Defective ABA-mediated sugar signalling pathway in an established Arabidopsis thaliana cell suspension culture explains its stay-green phenotype at high sugar concentrations
... global transcriptome profiling approach coupled with meta-analyses of Arabidopsis wild type seedlings to assess whether this sucrose-insensitive phenotype of the cell suspension culture was due to either a ...
174
Transcriptome Assembly and Profiling of Candida auris Reveals Novel Insights into Biofilm-Mediated Resistance
... ABSTRACT Candida auris has emerged as a significant global nosocomial pathogen. This is primarily due to its antifungal resistance profile but also its capacity to form adherent biofilm communities on a range of clinically ...
14
Ribosome profiling uncovers selective mRNA translation associated with eIF2 phosphorylation in erythroid progenitors
... the transcriptome and unaligned reads to the genome with Spliced Transcripts Alignment to Reference (STAR) ver- sion ...(ribosome profiling versus RNA- seq) and condition (Tm-treated versus untreated) while ...
24
Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
... It has been suggested that genome dominance post-polyploidy determines the fate of duplicated genes and gene expression has been positively correlated with maintenance of gene copies in [r] ...
18