Transcriptome - quality assessment and preliminary analysis
Preliminary analysis of Psoroptes ovis transcriptome in different developmental stages
... Man-Li He 1 , Jing Xu 1 , Ran He 1 , Neng-Xing Shen 1 , Xiao-Bin Gu 1 , Xue-Rong Peng 2 and Guang-You Yang 1* Abstract Background: Psoroptic mange is a chronic, refractory, contagious and infectious disease mainly caused ...
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Quality Assessment of Transcriptome Data Using Intrinsic Statistical Properties
... tight transcriptome data quality control is compulsory. Usually, quality control is achieved using labeling and hybridization controls added at different stages throughout the processing of the ...
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TransRate: reference-free quality assessment of de novo transcriptome assemblies.
... Figure 1. Common errors in de novo transcriptome assembly, and how they can be detected using read mapping data. Family collapse occurs when multiple members of a gene family are assembled into a single hybrid ...
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External quality assessment of medical laboratories in Croatia: preliminary evaluation of post-analytical laboratory testing
... a preliminary picture of the early stages of post-analytical EQA at the national level in ...the preliminary analysis here, future work may wish to look at these issues in greater ...
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A PRELIMINARY ASSESSMENT OF AIR QUALITY IN KABUL
... poor quality of the fuel, plugged up air filters by rapid accumulation of particulate matter present in the air, and decreased partial pressure of oxygen in Kabul because of high elevation of the city ...
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Preliminary assessment of water quality in Ayede-Ekiti, Southwestern Nigeria
... 1 Department of Geology and Mineral Sciences, University of Ilorin, P. M. B. 1515, Ilorin, Nigeria. 2 Department of Geology, Federal University of Technology, P. M. B. 65, Minna, Nigeria. Accepted 17 January, 2011 ...
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Concussion assessment in the emergency department: a preliminary study for a quality improvement project
... There are several limitations to this study. Apart from the small sample size, it relies on the assumption that 30-day reattendance to the ED correlates with worse symptoms or a more severe concussion. There were a ...
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Preliminary assessment of the impact of commercial aircraft on local air quality in the U.S.
... Table 1. ICAO Time in Mode and Thrust Setting Assumptions ... Calvert Factors used to adjust maximum ICAO smoke numbers... Engine Volumetric Flow Rates by Mode ... Mode specific [r] ...
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River Water Quality Preliminary Rapid Assessment Using Pollution Index
... water quality is a compulsory since river is a dynamic ecosystem, influenced by various activities in the river ...a preliminary rapid river water quality status determination using pollution index ...
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Shared reading quality assessment by parental report: preliminary validation of the DialogPR
... Our study also has a number of limitations that should be noted. Our sample population was a com- bination from 2 smaller studies, which can also be viewed as a strength, and efficient, innovative use of resources. The ...
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A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
... the transcriptome assembly pipeline for generating high quality non-redundant transcriptomes for improved accuracy of RNA-seq ...the quality of transcriptome annotation can have a major im- ...
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Assessment of Potential Antibiotic Contaminants in Water and Preliminary Occurrence Analysis
... The methodology for literature review involved several tasks in the following order: (1) identification of popular antibiotics commonly used in human therapy and in animal husbandry,[r] ...
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Assessment of the microbiological quality of fresh produce on sale in Sicily, Italy: preliminary results
... Abstract Background: Fresh produce occupies an increasingly important place in the human food supply because of its health-promoting nutritional properties. Most fresh produce is eaten raw or after minimal processing ...
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Problem Analysis on Data Quality Assessment Issues
... 1. Definition and description – the formal definition of the attribute and a general description of the attribute. For example, pH: the negative log of the hydrogen ion concentration. A measure of the acidity or ...
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Analysis of anisotropic blind image quality assessment
... Image quality basically refers as the amount of degradation present in an im- ...the quality of an image. An image of high quality is always desirable but quality of an image cannot be ...
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Preliminary Interdependency Analysis: An Approach to Support Critical Infrastructure Risk Assessment
... by exploring its state space. Techniques such as fault-tree analysis (FTA) or failure-mode, effects and criticality analysis (FMECA) largely concern exploring an existing model (e.g. one given by plant ...
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Preliminary assessment on water quality and biodiversity in and around Palak Dil in southern Mizoram, India
... The water quality, viz. temperature, pH, total dissolved solids, electrical conductivity, acidity, alka- linity, dissolved oxygen, biological oxygen demand, carbon dioxide, total hardness, chloride, nitrate, ...
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Preliminary assessment of marine water quality in bathing, surfing and fishery areas of arugam bay
... microbiological quality of a recreational water body at any given ...microbial quality of recreational water may be strongly influenced by factors such as rainfall within the catchment, potentially leading ...
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Transcriptome analysis of monocyte HIV interactions
... this preliminary experi- ment was too low to identify reliable individual biomar- kers with sufficient statistical power, these datasets can be used to distinguish the broad cellular processes or pathways which ...
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Assembly and analysis of the miscanthus ?? giganteus transcriptome
... alternative energy sources has recently heightened interest in developing M. × giganteus as a biofuel due to, among other factors, its exceptionally large biomass yield. In this study, mRNA extractions from ten ...
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