Whole-‐genome analysis and
Preliminary results on the whole genome analysis of a Vietnamese individual
... the whole genome analysis of an anonymous Vietnamese individual of the Kinh ethnic group (KHV) that was deeply sequenced to 30-fold using the Illumina sequencing ...sequenced genome covered ...
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Dirofilaria immitis JYD 34 isolate: whole genome analysis
... to whole genome analysis and comparisons is small, the results to date do suggest a pattern in which isolates that are resistant to ML heartworm preventives have distinct genetic profiles when ...
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Estimation and partition of heritability in human populations using whole-genome analysis methods
... three whole-genome analysis methods that use mixed linear models (MLM) to estimate genetic variation, using the relationship between close or distant relatives based on pedigree or ...Using ...
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Whole genome analysis of animal A and B type cyclins
... Results C. elegans: a single cyclin A gene and multiple cyclin A pseudogenes On the basis of hybridization of a cyclin A cDNA to a South- ern blot of genomic DNA it has been reported that C. elegans has multiple A-type ...
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Whole-genome analysis of sporulation and germination in Clostridium difficile
... microarray analysis described in Chapter IV, in which cwp7 was found to be the only CWP gene with significantly up-regulated expression during germination, an attempt was made to further investigate this ...
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Whole Genome Analysis in Korean Patients with Autoimmune Myasthenia Gravis
... a whole-genome associ- ation study of a large group of autoimmune MG patients and neurologically normal control ...regional analysis, we selected seven genes (RYR3, CACNA1S, SLAMF1, SOX5, FHOD3, ...
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Association testing by haplotype sharing methods applicable to whole genome analysis
... The strength of single-SNP association analysis was infe- rior to that of our two haplotype sharing methods, sug- gesting that the latter indeed contain more information. The HSS and CROSS showed more significant ...
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Analysis of the bread wheat genome using whole-genome shotgun sequencing
... wheat genome have been substantial barriers to genome ...hexaploid genome using 454 pyrosequencing, and comparison of this with the sequences of diploid ancestral and progenitor ...hexaploid ...
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Bioinformatics analysis of whole-genome shotgun metagenomic data
... MEGAN is MEta Genome ANalysis tool that is used for the analysis of metagenomic or meta-transcriptomic data. A DAA file has to be “meganized” before it can be opened in MEGAN, using a tool called ...
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BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU
... BALSA takes a different approach to store the alignment results for large-scale genome analysis. It stores a “SNAPSHOT” that records the per-base details with almost the same fidelity of a pileup from a BAM ...
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Whole genome diversity, population structure and linkage disequilibrium analysis
... for genome diversity ...cluster analysis and Bayesian-based model population structure grouped chickpea genotypes into four distinct ...component analysis (PCoA) and Discriminant Analysis of ...
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Whole Genome Sequence of a Turkish Individual
... detailed analysis of the whole genome sequence of a Turkish ...Although whole genome human sequencing is almost routinely done, very few of these efforts provide high coverage and ...
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Whole-Exome/Genome Sequencing and Genomics
... the genome, the sum total of all the genes of an organism. The human genome, which is contained in the 23 pairs of nuclear chromosomes and in the mitochondrial DNA of each cell, com- prises ...Human ...
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Whole genome sequence analysis of Mycobacterium suricattae
... 1286274 GC G Rv1159 1296 1284992 1286287 + Mannosyltransferase PimE cell wall and cell processes Polyprenol-phosphate-mannose dependent mannosyltransferase involved in phosphatidylinosit[r] ...
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Whole genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome
... reference genome assembly. In the large indel analysis using the mate-pair libraries, ≥ 90% of large indels included repeat sequences in the genome, indicating that these are poten- tial repeat ...
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Bioinformatics analysis of whole genome resequencing data in the chicken
... chicken genome, as such errors are not considered in the algorithm of large indel ...the whole mate-pair library and the threshold of ...further analysis to optimize the parameters and some ...
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Bioinformatic analysis of Mycobacterium tuberculosis whole genome data
... the! genome! sequence! ...start!sites!(TSSs)!(Cortes!et#al.!2013)!and!identification!of!non9coding!RNAs!in!the!Mtb! genome! (Miotto! et# ...the! genome! for! the! first! time! (Galagan! et# ...
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To Get the Whole Picture, Sequence the Whole Genome Comparing whole genome sequencing and exome sequencing
... with whole genome ...the genome targeted by exon capture. Finally, LOH analysis can have reduced power (depending on the size of the deletion) given the uneven spatial sam- pling of small ...
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Mutational analysis of non-coding genome in prostate cancer using whole genome sequencing
... the genome may relate to ...coding genome due to cost of WGS or because there is certain level of difficulty in interpreting non-coding ...non-coding genome which is freely available has made it ...
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Whole genome sequence analysis of serum amino acid levels
... the other three approaches collapse rare and low- frequency variants into a burden test because insufficient information is available for any one rare variant within a fixed sample size. The gene exon approach leverages ...
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