[PDF] Top 20 Algorithms for Peptide Identification from Mixture Tandem Mass Spectra
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Algorithms for Peptide Identification from Mixture Tandem Mass Spectra
... for mixture spectra de novo sequencing will have to take account of the fragments from both of the co-sequenced precursors ...the spectra, it is always required that other supporting ion types ... See full document
123
Algorithms for Glycan Structure Identification with Tandem Mass Spectrometry
... of mass spectrometry based glycoproteomics ...theoretical mass spectra with the experimental mass ...the algorithms construct glycan structures from mass spectra ... See full document
109
A novel approach to denoising ion trap tandem mass spectra
... based algorithms are currently the leading peptide identi- fication ...the identification of peptides. To increase the reliability of peptide identifications, some researchers have combined ... See full document
10
An unsupervised machine learning method for assessing quality of tandem mass spectra
... of tandem mass spectra by supervised machine learning methods, which require labelled training datasets to train a ...classify spectra into high-quality or poor-quality ...some peptide ... See full document
8
Quality Assessment of Tandem Mass Spectra by Using a Weighted K-Means
... of tandem mass spectra, which means a labeled training dataset is needed to train a classifier, and the trained classifier is used to classify spectra as high-quality or poor-quality ...some ... See full document
8
An Unsupervised, Model-Free, Machine-Learning Combiner for Peptide Identifications from Tandem Mass Spectra
... decoy peptide identifications to estimate the FDR of each of our various algorithms for selecting the best peptide ID for each ...our algorithms require that scores or E-values be calibrated, ... See full document
14
Capillary Electrophoresis Mass Spectrometry pdf
... of peptide mixtures, protein digests, drug substances and biotechnological ...ionization mass spectrometry (ESI } MS), R rst reported by Olivares et ...molecular mass information and structural ... See full document
7
Freeze-dried plasma proteins are stable at room temperature for at least 1 year
... samples from male and female subjects ranging in age from 24 to 74 years were col‑ lected on ice, processed ice cold and stored frozen at − 80 °C, in liquid nitrogen (LN2), or freeze dried and stored at ... See full document
14
PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data
... throughput tandem mass spectrometry (LC-MS/MS) data is one of the most common and critical aspects of ...search algorithms (such as Sequest, Mascot ...additional algorithms are essential to ... See full document
15
Identification of pathogens from native urine samples by MALDI-TOF/TOF tandem mass spectrometry
... their mass spectra fingerprint, we relied on peptide ion fragments from MS/MS scans and MASCOT protein search results which were translated into MASCOT based uropathogen identification ... See full document
9
Michalski, Annette (2012): Overcoming challenges of shotgun proteomics. Dissertation, LMU München: Fakultät für Chemie und Pharmazie
... in mass spectrometry (MS)-based pro- teomics is the identification of peptides by their fragment ...the identification score achieved, almost all tandem-MS (MS/MS) spectra contain ... See full document
142
Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation
... for peptide identification include Sequest [1] and Mascot ...experimental spectra with theoretical spectra in a database and use scoring functions to measure the similarity between ...the ... See full document
8
A modified liquid chromatography/tandem mass spectrometry method for predominant disaccharide units of urinary glycosaminoglycans in patients with mucopolysaccharidoses
... Two main merits of our method that differ from the method reported by Auray-Blais et al. are sample itself and the addition of internal standards. According to the method previously reported by Auray-Blais et al., ... See full document
10
A rough guide to metabolite identification using high resolution liquid chromatography mass spectrometry in metabolomic profiling in metazoans
... the mass of a compound increases the number of possible combinations of elements which can add up to make its exact mass ...measured mass on correct assignment of elemental composition is to look at ... See full document
10
A Peptidomic Analysis of the Potential Comorbidity Biomarkers for Type 2 Diabetes Mellitus and Alzheimer’s Disease
... Type 2 Diabetes Mellitus (T2DM) and Alzheimer’s disease (AD) are consistent in many aspects, which provide a theoretical basis for the correlation between them. There are some mainly manifested in the following aspects ... See full document
10
Peptide sequences by mass spectrometry : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry at Massey University
... due to cleavage on both sides of the carbonyl group of the peptide linkage and that identification of these ions in the mass spectrum of a N-trifluoroacetyl-peptide methyl ester was suff[r] ... See full document
159
Peptide sequences by mass spectrometry : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Biochemistry at Massey University
... due to cleavage on both sides of the carbonyl group of the peptide linkage and that identification of these ions in the mass spectrum of a N-trifluoroacetyl-peptide methyl ester was suff[r] ... See full document
22
Application of tandem two dimensional mass spectrometry for top down deep sequencing of calmodulin
... 2D mass spectrum that retains all the MS/MS information from all the precursors in the sample simultaneous- ly [9, ...cutting-edge algorithms for the de-noising of ... See full document
6
Metabolomics Investigation of Glyceollins by On-Line Liquid Chromatography-Electrospray Ionization Tandem Mass Spectrometry and Fungal Metabolite Identification by Thermal Desorption Analysis Coupled with Gas Chromatography-Mass Spectrometry
... detected from the freshwater simulated flooding with added nutrients (day 40) include 2- hexen-1-ol, cyclohexanone, 2,2,6-trimethylcyclohexanone, octanal, and 2,5- ...obtained from a moldy building, but it ... See full document
106
A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data
... resulting from peptide fragmentation in MS/MS can be expressed as a compli- cated mathematical function of various features that reflect the physical, chemical and other characteristics of fragmented ...a ... See full document
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