[PDF] Top 20 Performance Characteristics of Human Immunodeficiency Virus Type 1 (HIV 1) Genotyping Systems in Sequence Based Analysis of Subtypes Other than HIV 1 Subtype B
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Performance Characteristics of Human Immunodeficiency Virus Type 1 (HIV 1) Genotyping Systems in Sequence Based Analysis of Subtypes Other than HIV 1 Subtype B
... Comparative analysis. The DNA sequences generated for each panel member were aligned using the MegAlign program of Lasergene Navigator (version 1.6; DNASTAR Inc., Madi- son, Wis.). The electropherograms were ... See full document
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Performance of the Celera Diagnostics ViroSeq HIV 1 Genotyping System for Sequence Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains
... panel. HIV-1-infected plasma samples were collected from 126 individual asymptomatic blood donors between 1993 and 2001 in Cameroon (61 donors), Brazil (21 donors), Uganda (17 donors), South Africa (15 ... See full document
7
Design and Evaluation of a Human Immunodeficiency Virus Type 1 RNA Assay Using Nucleic Acid Sequence Based Amplification Technology Able To Quantify Both Group M and O Viruses by Using the Long Terminal Repeat as Target
... the HIV-1 genome (e.g., NucliSens HIV-1 QT assay [Or- ganon Teknika, Boxtel, The Netherlands] or Amplicor version ...1.5 HIV Monitor test [Roche Diagnostics, Basel, Switzerland]) (15, ... See full document
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Genotyping of B and Non B Subtypes of Human Immunodeficiency Virus Type 1
... an HIV-1 viral load of ⬎ 1,000 copies/ml, as determined by the branched chain DNA assay ...clinician based on the patient’s country of origin, risk factors, and exposure ...all other ... See full document
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Development of Calibrated Viral Load Standards for Group M Subtypes of Human Immunodeficiency Virus Type 1 and Performance of an Improved AMPLICOR HIV 1 MONITOR Test with Isolates of Diverse Subtypes
... The human immunodeficiency virus (HIV) type 1 (HIV-1) pandemic is associated with the geographic dispersal of genet- ically diverse viral ...nine subtypes ... See full document
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Impact of Human Immunodeficiency Virus Type 1 (HIV 1) Genetic Diversity on Performance of Four Commercial Viral Load Assays: LCx HIV RNA Quantitative, AMPLICOR HIV 1 MONITOR v1 5, VERSANT HIV 1 RNA 3 0, and NucliSens HIV 1 QT
... Ninety-seven HIV-1-se- ropositive plasma samples collected in Cameroon (n ⫽ 47), South Africa (n ⫽ 29), and Brazil (n ⫽ 21) were utilized for this ...and subtype. Specimens for which the ... See full document
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High Frequency of Non-B Human Immunodeficiency Virus Type 1 (HIV-1) Subtype Specific Mutations at the Protease Gene among Treatment-naive HIV-1 Infected Individuals in Jos, Nigeria
... using Sequence Quality Assessment Tool. For preliminary genetic subtype determination and phylogenetic analyses, population-based genotyping was performed using the REGA subtyping tool version ... See full document
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Simple Subtyping Assay for Human Immunodeficiency Virus Type 1 Subtypes B, C, CRF01 AE, CRF07 BC, and CRF08 BC
... to subtype HIV strains, in which outer primers were universal for HIV-1 M group strains, and the inner primers were subtype-specific primers that were only reactive to one designated ... See full document
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Performance of the Affymetrix GeneChip HIV PRT 440 Platform for Antiretroviral Drug Resistance Genotyping of Human Immunodeficiency Virus Type 1 Clades and Viral Isolates with Length Polymorphisms
... by other investigators (6, 7), we found little difference in the cDNA sequences obtained from the same plasma samples processed for either the Affymetrix assay or for conventional cycle sequencing by the ABI tech- ... See full document
5
Molecular Characterization of Human Immunodeficiency Virus Type 1 (HIV 1) and HIV 2 in Yaoundé, Cameroon: Evidence of Major Drug Resistance Mutations in Newly Diagnosed Patients Infected with Subtypes Other than Subtype B
... FIG. 1. (A) Phylogenetic tree of HIV-1 PR-RT sequences from 78 HIV-1 group M and O ...cross-sectional analysis and indicates the country (Cameroon) and location (Yaounde ´) of ... See full document
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Human immunodeficiency virus type 1 ((HIV 1) subtypes in the northwest region, Cameroon
... of 1 ml each were collected from each patient and stored at − 80 °C until transported in an ice box to the Molecular Biology Laboratory of CIRCB-Yaoundé for analysis at CIRCB-Yaoundé where the samples were ... See full document
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Plasma RNA Viral Load in Human Immunodeficiency Virus Type 2 Subtype A and Subtype B Infections
... of HIV-2 subtype A and subtype B strains in ...of HIV-2 was a major obstacle to the development of the assay, as HIV-2 subtypes A and B are more distant from each ... See full document
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Performance of Applied Biosystems ViroSeq HIV 1 Genotyping System for Sequence Based Analysis of Non Subtype B Human Immunodeficiency Virus Type 1 from Uganda
... and Human Ser- vices (DHHS), through contract N01-AI-35173 with Family Health International, contract N01-AI-45200 with the Fred Hutchinson Can- cer Research Center, and subcontracts with JHU/Markerere Univer- ... See full document
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Prevalence of Human Immunodeficiency Virus Type 1 (HIV 1) Non B Subtypes in Foreigners Living in Madrid, Spain, and Comparison of the Performances of the AMPLICOR HIV 1 MONITOR Version 1 0 and the New Automated Version 1 5
... 32 human immunodeficiency virus type 1 (HIV-1)-infected for- eigners living in Madrid, Spain, were examined for the presence of non-B ...AMPLICOR ... See full document
5
Secondary structure model of the Mason-Pfizer monkey virus 5' leader sequence: identification of a structural motif common to a variety of retroviruses.
... and B. Natu- rally occurring compensatory sequence (covariant) changes were found between MPMV and SRV-2 at MPMV positions U-778 and C-779, which face nucleotides A-792 and G-791, respectively (panel ... See full document
12
Mechanistic differences between HIV 1 and SIV nucleocapsid proteins and cross species HIV 1 genomic RNA recognition
... and Human Development (JGL) and by National Institutes of Health Grants R01‑GM065056 (KM‑F) and R01‑GM072462 ...Diffraction Analysis Tech‑ nologies (IDAT) program, supported by the DOE Office of Biological ... See full document
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Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Envelope Variation and Neutralizing Antibody Responses during Transmission of HIV-1 Subtype B
... of HIV, due to the extremely high viral loads (4), the opportunity for viruses to evolve sensitivity to neutralizing antibody during transmission at a population level may be limited by the lack of genetic ... See full document
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Frequency, Causes, and New Challenges of Indeterminate Results in Western Blot Confirmatory Testing for Antibodies to Human Immunodeficiency Virus
... one other detectable viral ...the HIV RNA test ...after 1 month ...covering HIV-1/2/O and meeting the sensitivity of today’s ... See full document
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Modification of a loop sequence between α helices 6 and 7 of virus capsid (CA) protein in a human immunodeficiency virus type 1 (HIV 1) derivative that has simian immunodeficiency virus (SIVmac239) vifand CA α helices 4 and 5 loop improves replication in cynomolgus monkey cells
... adapted virus has not yet been fully characterized; so it may be that fur- ther modifications of the viral genome are necessary for optimal replication of HIV-1 genomes in OWM ...of ... See full document
11
In vitro activity of dolutegravir against wild type and integrase inhibitor resistant HIV 2
... in HIV-2, and the level of dolutegravir resistance in vitro that correlates with virologic failure in HIV-2– infected patients is ...to HIV-1, a broader array of amino acid changes in ... See full document
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