[PDF] Top 20 QTLMAS 2009: simulated dataset

... Gametes in generation 1,001 were combined into 25 genotypes (combinations were random, selfing was avoided). From these 25 genotypes, 20 genotypes were regarded as females and 5 genotypes were regarded as males. For ... See full document

... Conclusions: Bayesian model averaging methods predicted breeding values slightly better than GBLUP in a simulated data set. The methods utilizing genomic information performed better than traditional pedigree ... See full document

... the simulated QTL affect the parameters of the true logistic growth curve it might have been expected that methods that look for associations of markers with these underly- ing parameters had an ...this ... See full document

... Various criteria were applied to test for the presence of a QTL. Bouwman et al. [6] used threshold of 3.2 for the parameter-wise Bayes Factor. Calus et al. [7] obtain sig- nificance threshold from permutation of ... See full document

... similar set of interacting QTL was simulated in the XIV th QTLMAS dataset and was correctly mapped by all groups [14]. In addition, while one of the GBLUP tested by Zeng et al. [5] took epistasis ... See full document

... the QTLMAS XII workshop, a simulated dataset was distributed and participants were invited to submit analyses of the data based on genome-wide association, fine mapping and genomic ...on ... See full document

... The Pearson correlation between GEBV and the TV were consistent within type of technique used. The range was large, from 0.49 (GEBV- TGV correlation, 0.47 for GEBV-TBV) for the Mucha et al. [15] fixed effect model to ... See full document

... Results: The population comprised 3000 individuals issued from 20 sires and 200 dams. Within each family, 10 progenies belonged to the experimental population and were assigned phenotypes and marker genotypes and 5 ... See full document

... Marker alleles were sampled for 6000 biallelic loci on 6 chromosomes (1000 markers on each chromosome) with 0.1 cM between adjacent loci. In the founder individuals (G h1 ), the two alleles at each marker locus were ... See full document

... detected on both PCs. Most of the detected positions had already been identified in the single-trait analysis, and several of the proposed positions were false signals. Two new positions were also identified, one by ... See full document

... Comparing the QTL detected with our method to true QTL locations revealed differences and similarities. We detected QTL on chromosome 5 while no QTL were simulated on this chromosome. This false detection is ... See full document

... This simulated data set was very useful in showing the power and limitations to estimate QTLs in time-related traits in situations where the QTLs are involved not so much in the expression of the trait at a single ... See full document

... MSWEP dataset, including an improved resolution of ...CHIRPS dataset ap- pears to provide the best estimates of surface water availabil- ity in basins larger than 2000 km 2 for determining the irriga- tion ... See full document

... An analytical study on SER was carried by Abraham et.al. on a customized Russian dataset [18]. The results obtained showed that the data from a single subject is much more superior than the data collected from a ... See full document

... whole dataset is completed, which contains of 20,000 clean barcode, 30,000 blurred barcode, 30,000 damaged barcode and 20,000 strong damaged ...the dataset is randomly split into two groups: 90,000 samples ... See full document

... The simulated dataset ( X ) on ranking scores of 30 candidates awarded by 7 evaluators, the results obtained by running the principal component algorithm and the overall rankings based on the same (Y and Z ... See full document

... In recent decades, several peatland models have been developed, varying in spatial and temporal scale and in model complexity (Frolking et al., 2010). A good overview of the models developed for simulating long-term ... See full document

... In this paper, we formalize the Internet price war as an imperfect and incomplete information game. We design an LDA model to explore unknown variables from one partici- pant’s perspective. The inferred information is ... See full document

... The analysis presented here combined the strengths of an ob- served and a simulated dataset, providing a comprehensive picture of the extremeness of past drought events across both space and variables. Our ... See full document

... metagenome dataset, as well as used it to reproduce in a fully automated fashion the results of a previous analysis profiling aquatic cobalamin producers ... See full document