[PDF] Top 20 The Roche Cancer Genome Database 2.0
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The Roche Cancer Genome Database 2.0
... Another important feature of the RCGDB compared to already published databases on human variation data can be found in our powerful search interfaces: Muta- tion databases offer mostly access via gene, sample and tissue ... See full document
5
diArk 2 0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data
... the database, and all tables and graphs are calculated on- the-fly depending on users ...The database is searched using any of the six search modules, or a combi- nation of ...“ Genome Stats ” result ... See full document
12
Identification of molecular markers associated with the progression and prognosis of endometrial cancer: a bioinformatic study
... The raw data on GSE17025 and TCGA were integrated. We obtained gene expression profiles form GEO data- base (http://www.ncbi.nlm.nih.gov/geo/). GSE17025 dataset [14] covered 91 tumor and 12 normal tissue sam- ples. ... See full document
18
The database of the Danish Renal Cancer Group
... renal cancer register online in the web-based form at the time of ...renal cancer cases during the last study period August 1, 2014–July 31, 2015, with a variation between departments treating more than ten ... See full document
5
Possible Human Papillomavirus 38 Contamination of Endometrial Cancer RNA Sequencing Samples in The Cancer Genome Atlas Database
... Filtering human, bacterial, and abundant sequencing reads. All un- mapped reads were initially extracted from TCGA BAM (binary se- quence alignment map) files using samtools (11). The low-quality reads were removed using ... See full document
7
Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
... der default settings (e.g., considering only the high- scoring segment pairs (HSPs) from the best 250 hits) with the most recent release of the Greengenes da- tabase [8] and the relative frequencies of taxa and keywords ... See full document
9
Aberrant promoter methylation profiles and association with survival in patients with hepatocellular carcinoma
... The Cancer Genome Atlas data, we identified genes with differentially methylated promoters in HCC tissues and adjacent non-tumor tissues, using the linear models for microarray data ... See full document
9
Expression of the receptor for hyaluronic acid mediated motility (RHAMM) is associated with poor prognosis and metastasis in non-small cell lung carcinoma
... The Cancer Genome Atlas (TCGA; ...version 2 gene expression values (level 3) and clinical data with patients’ survival information from lung adenocarcinoma and lung squamous cell carcinoma, caArray ... See full document
13
<p><em>DUXAP8</em> a Pan-Cancer Prognostic Marker Involved in the Molecular Regulatory Mechanism in Hepatocellular Carcinoma: A Comprehensive Study Based on Data Mining, Bioinformatics, and in vitro Validation</p>
... lung cancer and gastric cancer by bioinformatics analysis based on GEO datasets, 9,10 we could not fi nd any data on DUXAP8 expres- sion in human cancers from the GEO database, which might be due to ... See full document
14
Upregulated LAMB3 increases proliferation and metastasis in thyroid cancer
... Materials and methods: We analyzed LAMB3 expression using The Cancer Genome Atlas (TCGA) database and hypothesized LAMB3 to be a gene associated with PTC. To test this hypothesis, we collected 89 ... See full document
10
IRAK4 mediates colitis-induced tumorigenesis and chemoresistance in colorectal cancer
... on 2 commercial CRC TMAs with annotated overall survival ...The Cancer Genome Atlas (TCGA) database showed that the overall survival of stage IIb–III colon cancer patients with tumors ... See full document
19
High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)
... whereas the average coverage by HSPs was 99.0%. Among all other species, the one yielding the highest score was 'Venteria marina' (DQ097522), which cor- responded to an identity of 100.0% and an HSP cov- erage of 99.0%. ... See full document
10
Four-miRNA signature as a prognostic tool for lung adenocarcinoma
... Patients and methods: Using expression profiles downloaded from The Cancer Genome Atlas database, we identified multiple miRNAs with differential expression between LUAD and paired healthy tissues. ... See full document
8
Direct next-generation sequencing of virus-human mixed samples without pretreatment is favorable to recover virus genome
... human genome (hg19) and the unaligned reads were then aligned to a dataset including reference genomes of Mycoplasma (313 se- quences, NCBI genome database), bacterial (3022 se- quences, NCBI ... See full document
10
<p>Identification of a transcription factor-microRNA network in esophageal adenocarcinoma through bioinformatics analysis and validation through qRT-PCR</p>
... Subsequently, a TF-miRNA-target gene network was con- structed to study the potential molecular mechanisms, and we found that TP53-(miR-125b)-ID2 and JUN-(miR-30a)-IL1A might play signi fi cant roles in EAC. Once the ... See full document
12
Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT)
... long genome with its 2,375 protein-coding and 60 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea ... See full document
9
Livestock 2 0 – genome editing for fitter, healthier, and more productive farmed animals
... Several groups have attempted to reduce the environ- mental impact of pig production through the addition of microbial genes into the pig genome [44, 45]. Dietary supplementation with phosphate and nitrogen is re- ... See full document
11
A ten-long non-coding RNA signature for predicting prognosis of patients with cervical cancer
... Materials and methods: We downloaded lncRNA expression profiles and clinical charac- teristics from The Cancer Genome Atlas database and randomly divided them into a training dataset (n=200) and a ... See full document
10
SorGSD: a sorghum genome SNP database
... SorGSD contains ~62.9 million SNPs identified from the re-sequencing data of 48 sorghum lines mapped to the reference genome BTx623. These sorghum lines represent major cultivated races grouped into landraces or ... See full document
9
Killers 2 0: NK cell therapies at the forefront of cancer control
... Despite their potent antitumor activity, NK cells face substantial challenges that hinder their efficacy. Several studies have shown that tumor-infiltrating human NK cells have altered expression of inhibitory and ... See full document
13
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