PH
ENOWPIC
AND
PHYSIOLOG ICAL CHARACTERIZATIONOF RHOZOBIA
STRAIN5
ISOLATEDFROM
DIFFERENT AREAS OFBIHAR INDIA
ShuchiSmito, Subodh K. Sinhal,
V
K Shorma, and V K ShohiDepartment of Agricultural Biotechnology & Molecular Biology, Faculty of Basic Sciences and Humanities, lDepartment of Biochemistry Faculty of Basic Sciences & Humanities,
Rajendra Agricu ltural U niversity, Samastipu r, Bihar (848125)' E-mail: [email protected]
Received: 24 Dec.2010, Revised:21 April 2011 ABSTRACT
The phenotypic and physiological diversity of ten rhizobia strains isolated from three different grain legumes was investigated. Colony morphology of different rhizobia and resistance to antibiotics, tolerance to salinity, to extreme temperatures and pH were studied under the present investigation. The dendrogram was obtained following unweighted pair group method using arithmetic averages. The clusters were identified at appropriate phenon level. The variation
for
optical appearance and consistency was less pronounced while forms, margin and elevationof
colonies shows wide rangeof
variation. Among all isolatesof
rhizobia, except isolates RA-1 and RA-2, rest were sensitiveto
high concentrationof
NaCl where as CaCl, shows positive effect on the growth of all isolates with maximum CFU by isolate RA-1. The best tolerance for high temperature was recorded in RA-1, RA-2 and RA-4, the isolates of Coianus cajan.Rests of
the
isolates were sensitiveto
high temperature i.e. 420C. 7.5 pH was noticed as optimum for excellent to good growth of all ten isolates of Rhizobia. These isolates were also suitable for wide rangeof
pH. RA-6,the
isolatenodulating
Viciofoba
showed bestantibiotic i.e. ampicilin
and Erythromycin tolerances alongwith
isolates RA-1 and RA-10 which shows tolerance to ampicilin.Keyurords: Legumes, phenotypic diversity, physiological diversity, Rhizobia strains
INTRODUCTION
Soil micro-organism plays an important role in
soil
processesthat determine plant productivity.
Rhizobia,
a symbiotic nitrogen fixing bacteria,
hadsignificant importance in agriculture.
Rhizobia are classically defined as soil bacteria, which are non spore form i n g, gram negative, a ero bic, chemo-organotrop hic, free living and fixes atmospheric nitrogen symbiotically.The Rhizobia colonies are convex, circular,
semi translucent, raisedand
mucilaginous (Jordan 1984).Rhizobia in
root
nodules are estimatedto
carryout
50 to 70 percent of the world's biological nitrogen fixationand the estimated annual biological fixation of
atmospheric nitrogen varies between 100 x 106 and 180x
106 metrictons
per year (Phillips 1980; Burris and Roberts1993). Unfavorable pH, high temperature,
salinity had detrimentaleffect on
legumes aswell
as microbes. Nearly 40 per cent of the world land surface can be categorized as having potential salinity problem (Cordovillaet ol. !994l.lncreasing
salt concentration affect Rhizobia growth dueto
direct toxicity as well asosmotic stress (Tate 1995).
ln
tropical and subtropical areas, high soil temperature was a major problem for biological nitrogenfixation of
legume crops, as high temperature strongly affects bacterial infection. For most rhizobia, the optimum temperature range for growth in culture is 28to
300C and many are unableto
grow at300C (Graham 1992). Rhizobia appear to be more tolerant
to
alkalinity in generalbut it
was also foundthat
some speciesof
Rhizobium cannot do wellat
high pH. Slow- growing strains appearto
be more tolerantto
low pH than fast-growing strains (Jordon, 1984). However, somefast-growing strains such
as Rhizobiumtropici
and Mesorhizobiumloti
can grow at a pH as low as 4 (Graham 1992; Gao et al. t9941. Rhizobia show difference in their response against antibiotics. ln general the fast growingrhizobia are more sensitive than slow growing bradyrhizobia to many antibiotics (Jordan
1984).However, Chickpea rhizobial strains which are mixture of fast, slow and extra-slow grower, showed wide range of behaviors with regard to antibiotics and heavy metals and indicated the tolerance of strains
to
antibiotic and heavy metal is not correlated with their growth rate but it could be related to the bacterial species (Maatallahet
al.
2O021.The above information from different
observation suggests that there are considerable amount of diversity found in Rhizobia, both at phenotypic as well as morphological level. Considering above fact,in
the present study, we have investigated morphological and physiologicaldiversity
amongten different
rhizobial strains isolated from three different crops root nodules of different region of Bihar.MATERIATS AND METHODS
1)
Bacterial strains and culture conditions:Shuchi et ol.
Strains
of
rhizobia were isolatedfrom root
nodulesof
different cultivars of arhar (Caionus caianl, baqla (Vicrofoba
L.l and pea (Pisum sotivuml growingin the
crop fieldsof
Saraiyan andMarvan
blocksof
Muzaffarpur district of Bihar. The details of different isolates taken in present investigation are givenin
Table 1. The Yeast ExtractMannitol
(YEM) media wasroutinely
usedfor
isolation, purification and multiplication of these Rhizobia
(Vincent 1970) as the basal medium during the
experiment. YEMA basal medium was supplemented with different concentration of various adjuvants to generate an array of media. These isolates were identified by Gram staining and
further
bytheir
oxidase (Steel 1961) and catalaseactivities (MacFaddin
1930).The purity of
Rhizobia wasensured repeatedly by streaking
andmicroscopic examination with gram staining' These pure isolates were maintained by repeatedly sub culturing on YEMA
slant at
28+10Cand storing them at low
temperature i.e. 5-70C.2l
Morphological and Physiological studies:lnoculation
of
pure isolatesof
Rhizobia on YEMA plate at 28+10C results in colony formation after 36-40 hours' The colony morphologyof
isolates was studiedafter
2 days. Starter cultureof the
isolates was Srown in YEM broth at 28+10C for 48h and serial dilution upto 10-6 wasdone.
Fromthis, 1 ml of
suspension wastaken
and transferred into YEMA reception plates with varying saltconcentration, pH and temperature.
Eachof
these experiments was performed in triplicate.a)
Salt tolerance:Tolerance to Sodium Chloride (NaCl) and calcium chloride (CaClr) was tested through determining
the
growth on YEMA medium supplementedwith
NaCl and CaCl, at a concentrate of 7%, 2% and 3% (w/v) a nd 0.5 %, t.0% andt5%
(w /vl
respectively.b)
pH tolerance:Tolerance to extreme pH was tested on YEM agar medium set at different pl-l values
i.e.6.5,7.0,7'5
and 8'0 usingNaOH.
c)
Temperature tolerance:Rhizobial
growth
patternat
different temperature wasdetermined on
YEMagar plates by incubating the
bacterial cultures agar at 221L0,27=10,32110,37110 and 42+toc.d)
lntrinsicAntibiotic
Resistance profiles:Resistance
to antibiotics
was testedon
YEMA platessupplemented with the following filter sterilized
antibiotics (uc/ml")separately. Ampicillin (25, 50 and 60) and Erythromycin (30 and 60). The test for each antibiotic was carried out in triplicate.3)
Statistical AnalysisThe data obtained from the laboratory analysis for each parameter were computed and then used for statistical analysis. The analysis was carried
out with the
helpof
RAUSTAT. The value of the standard error of mean (SEm1) of criticaldifference at 0.05 (5%)level of significance were computed among
the
various parameters which were obtainedfrom
the analysisfor
better interpretationof
the results.RESUITS AND DISCUSSION
a)
MorphologicalanalysisThe overall colony morphology has been summarized in Table.2. Most of the isolates were whitish and creamy;
two
were yellowish while a single isolate was colorlessin
nature. Colonies formsof
five isolates were circular, three were irregular where as one muriform and oneelongated form of colony was also observed.
Theelevations of colonies were convex, raised and flat types' Colony margin of the Rhizobia isolates showed variations.
Four isolates had lobate,
three
had undulate,two
haderose while one had entire margin. The optical
appearance of the colony of the Rhizobia isolates wereTable 1: Rhizobia isolates collccted from differcnt crops of Muzaffarpur
distr'rt
Samole No. Crop SoilWpe Block
RA1 Arhar Upland Sandy Soil Saraiya
RA2 Arhar Upland Sandy Soil Safaiya
RA3 Arhar Upland Sandy Soil Saraiya
RA4 Arhar Upland Sandy Soil Saraiya
RA5 Arhar Upland Sandy Soil Saraiya
RA6 Bakla Upland sandy/sandy loam soil Saraiya
RA7 Bakla Upland sandy/sandy loam soil Saraiya
M8
Arhar Clay loam MarvanRA9 Arhar Clav loam Marvan
RA 10 Pea Clav loam Marvan
282
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0t5 Coelfrienl
Fig. 1 Dendrogram based on eight morphologicalcharacters of ten Rhlzobia isolates
RA.I
RA.6
RA-2
RA-3
RA.8
RA-9
RA.?
RA.5
R t-I0
RA-4
032 t.t+
Coelfrhnt
Fig.2: Dendrogram based on taxonomic distance for physiologicalresponse parameters of Rhizobia isolates
Shuchi et ol.
either semi translucent or translucent. The consistency of the Rhizobia colony had variation. Five isolates were gummy, two were less gummy, two were slimy where as
one was non-slimy
in nature.
Maatallahet ol.
(2o021 observed both phenotypic and genetic variation in the chickpea rhizobia isolates collected from different areas of Morocco. Kucuk et a/. (2006) also observed significant differences for physiological characteristics of Rhizobium sp. isolated from bean.b)
Phenotypictraits
analysisThe various phenotypic traits viz. salt, pH, temperature tolerance and intrinsic
antibiotic
resistance, of the ten rhizobia isolates are summarized in Table 3, 4,5,6,7
and 8 respectively. Howeverthe
response of different conc.of
NaCl on growth (CFU)of
Rhizobia isolates indicated that all conc. (1-3%) of NaCl were inhibitory to all isolates of the Rhizobia as comparedto
control. But at tYo conc.of NaCl, RA-1 had maximum CFU 84.66 followed by RA-6 (80.00), RA-2 (78.00), RA-4 (73.33), and RA-5 (75.00).
However other isolates produced CFU in a range of 66- 77. As regard 2%o conc.
the growth
(CFU) ranged from 71.33to
38.66. Butof
3%o conc. nogrowth
(CFU) was observedin
RA-4 and RA-10. The result supports the results of Abdel-Wahab and Zaharn (1979) where theyhave reported that the strains of
Rhizobiumleguminosarum found to be tolerant to NaCl upto 4.27%
,whereas, the bacterial colonization
of
Viciafobo
were reducedin the
presenceof 0.61 to
t.O2% NaCl asobserved by Zahran and Sprent (1986). Simlarly, Chein et ol. (19921reported that the mutant strain of Rhizobium leguminosorum bv. viciae
which grew at
2.04% NaCl formed ineffective nodules. Theother
isolates showed excellent sensitivity against 3/o conc. NaCl whereas allisolates showed positive response to
CaCl,at
all concentration. However, maximum CFU was observed at 1.5% conc.in
all isolates as comparedto
control. RA-1 gave maximum CFU at allthree conc. i.e.0.5 to 1.5% CaCl, ranged from 114.33to
130.66 and significantly superiorto all
isolatesin
responseto
CaCl2. Therefore,it
was showed that upto I.5%oconc.,CaCl, has no negative effect on Rhizobia isolates collected from different part of Bihar.The
growth
performancesof all
isolates were best at27 +10 C. I ncreasing tem peratu re range showed decreasi ng
trend of
growthof
isolates. However,for
temperature ranging from 22+t0Cto
37+10C,the
growthin
rhizobia wasobserved.
Excellentgrowth of all isolates
was observedat
271LoC. Mediumgrowth
was observed at 22+t0C and 32+10C. But poorto
very poor growth was recorded at 37+10C and 42+10C. No CFU was noticed at 42+t0C in RA-3, RA-5to
RA-10. Therefore all isolates can be grown at temperature range of 22t10C to 37+10C. The effectof
pHon growth
(CFU)of ten
rhizobia isolates indicatedthat
pH6.5,7.0,7.5
and 8.0 supported the growth of all rhizobia isolates but 7.5 pH was noticed asoptimum pH for excellent to good growth. These isolates
of
rhizobia were suitablefor wide
rangeof
pH.lt
was noticed that RA-6 showed maximum tolerance to 30 and60 mg/ml of Erythromycin. Very little growth
was observedin
RA-5, RA-9and
RA-10at
30mg/ml.
Restshowed sensitivity with Erythromycin at both
concentrations as compared to control whereas isolates RA-2, RA-3, RA-4, RA-8 and RA-9 were found to be most sensitive against Ampicilinat
25, 50 and 60pglml
as comparedto
other isolates. RA-1 and RA-10 was found resistant at all concentrationbut
RA-5, RA-6 and RA-7 were resistant uptoto
50 mg/ml.Classification based
on
Morphological Character and Physiological Response:The dendrogram (Fig. 1) obtained from
numerical taxonomic analysis basedon
morphological charactersof ten
Rhizobia isolates indicatedthat
the isolates could be grouped into 8 clusters when phenon line was drawn takinginto
consideration 75 similarity units as cut off point. Out of the eight clusters resulted, clusters B, C, D, F, G and H were monoisolate clusters having RA-3, RA-4, RA-8, RA-1.0, RA-6 and RA-7 isolates,respectively. The isolates RA-1 and RA-2
were accommodated in cluster A, whereasthe
isolates RA-S and RA-9 could be placed into cluster E. Classificationof
Rhizobia isolates was also doneon the
basisof
their response to the environmental conditions, to which the strains were exposed. The classification was made usingtaxonomic
distance asa
measureof dissimilarity
in numerical taxonomic approachfor
the classificationof
isolates.
The method
for tree
buildingin the
analysis involvedsequential
agglomerative hierarchical non- overlapping clustering based on distance matrices. The dendrogram was obtainedfollowing
unweighted pair group method using arithmetic averages. The clusters were identified at appropriate phenon level (Fig. 2). A close perusal of dendrogram obtained forten
Rhizobia isolates (Fig.a.9) revealed that isolates could be classified into seven clusters when phenon line was drawn taking into consideration 25 dissimilarity units as cutoff point.Out of the seven clusters resulted, six clusters namely;
B, C, D, E, F
and
Gwere monoisolate clusters
andcomprised
RA-s, RA-10, RA-4, RA-2, RA-6and
RA-1isolates, respectively (Table 4.10). The isolates RA-3, RA- 7, RA.8 and RA-9 could be included in the cluster A. The nature of response of three isolates, namely, RA-l, RA-2
and
RA-6seemed to be most distinct from the
physiological responseof
remaining isolates while the isolates RA-8 and RA-9 were foundto
be most closely related isolates amongstthe
Rhizobia isolates included in the present study.286
ACKNOWTEDGEMENT
Dayaram, Associate Professor, Deptt. of Microbiology for Financial assistanceprovided under
AMAAS,ICAR,
his criticalsuggestions during the course of investigationNetwork project. Senior author is thankful to Dr'
and preparation of the manuscript.LITERATURE CITED
Abdel-Wahab HH and Zahran HH. 1979. Salt toleranc e of Rhizobium species in broth culture' Z' Allg. Microbiol. 19:
681-685
Burris RH and Roberts GP. 1993. Biological nitrogen fixation. Annu. Rev. Nutri.
t3:317-335
Chein
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