16S rRNA Gene
Three Cases of Anaerobiospirillum succiniciproducens Bacteremia Confirmed by 16S rRNA Gene Sequencing
... FIG. 3. Inferred phylogeny of the proteobacteria, obtained by using complete 16S rRNA gene sequences, showing the relationship of A. succiniciproducens to its closest relatives. Note that Haemophilus ...
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Analysis of 525 Samples To Determine the Usefulness of PCR Amplification and Sequencing of the 16S rRNA Gene for Diagnosis of Bone and Joint Infections
... The 16S rRNA gene PCR in the diagnosis of bone and joint infections has not been systematically ...to 16S rRNA gene PCR detection of bacteria in ...and 16S rRNA ...
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Sequence Diversity of Neisseria meningitidis 16S rRNA Genes and Use of 16S rRNA Gene Sequencing as a Molecular Subtyping Tool
... of 16S rRNA genes among Neisseria meningitidis strains (Men) and evaluated the use of this approach as a molecular subtyping ...the 16S rRNA gene from 264 Men strains of serogroups A, ...
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Identification of Chlamydia pneumoniae by DNA amplification of the 16S rRNA gene
... psittaci were described for PCR by using two primer sets lA-lB and 2A-2B derived from the 16S rRNA sequence of Chlamydia spp.. Primer pair 2A-2B was said to react with C.[r] ...
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Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians
... We selected target species for which morphological and bioacoustic uniformity suggests that populations from Ranomafana and Andasibe are conspecific. All these spe- cies belong to the family Mantellidae. We then analysed ...
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DETECTION OF SALMONELLA TYPHI AND HELICOBACTER GENUS IN GALLSTONE PATIENTS
... universal 16S rRNA gene (28 tissue specimen, 29 stone specimen and 12 bile specimen) was subjected to PCR for amplifying bacterial Salmonella typhi16S rRNA gene which detect Salmonella ...
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Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1AT)
... Figure 1. Phylogenetic tree highlighting the position of P. fumarii relative to the type strains of the other species within the order Desulfurococcales. The tree was inferred from 1,333 aligned characters [8,9] of the ...
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Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T)
... However, 16S rRNA sequences which probably belong to the genus Vul- canisaeta ( ≥ 95% sequence similarity to ...the 16S rRNA gene sequence of strain IC-017 T were ...
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Molecular Characterization of Biodegrading Bacteria from Soil Sample
... The 16s rRNA gene of the bacteria was carried out in our laboratory in the Thermocycler (Eppendorf). In PCR the specific primers (Forward and reverse primers) complementary to the known sequences ...
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Acinetobacter baylyi as a Pathogen for Opportunistic Infection
... the 16S rRNA gene (13), 16S-23S rRNA in- tergenic spacer (ITS) (6), recA gene (15), rpoB and flanking spacers (16), and gyrB gene (27), also allows identification of ...
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Drosophila melanogaster mitochondrial DNA: gene organization and evolutionary considerations.
... strand observed in the protein and 16s rRNA (Figure 2) coding regions does not include the tRNA genes. melanogaster 16s rRNA gene. When they are compared to the corresponding[r] ...
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Identification of Mycobacterium kansasiiby Using a DNA Probe (AccuProbe) and Molecular Techniques
... 16S rRNA gene. Sequencing of the first 600 bp of the 16S rRNA gene, including the species-specific region V2 of helix 10 as well as the variable V3 region of the helix 18, was ...
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Metagenomic analysis of basal ice from an Alaskan glacier
... using 16S rRNA gene (rDNA), 16S rRNA tran- script (rRNA), and metagenomic sequencing ...on 16S rRNA to rDNA ...
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Genetic Classification and Differentiation of Bartonella Species Based on Comparison of Partial ftsZ Gene Sequences
... encoding gene sequences have been used in genetic stud- ies: the 16S rRNA gene, the 16S–23S rRNA intergenic spacer region (ITS) (26, 37), the citrate synthase gene (gltA) ...
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Comparison of the Vitek MS and Bruker Matrix Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Systems for Identification of Chryseobacterium Isolates from Clinical Specimens and Report of Uncommon Chryseobacterium Infections in Humans
... ABSTRACT Matrix-assisted laser desorption ionization–time of flight mass spectrometry is becoming more popular and is replacing traditional identification methods in the clin- ical microbiology laboratory. We aimed to ...
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Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T)
... Figure 1. Phylogenetic tree highlighting the position of the family aligned characters [8,9] of the 16S rRNA gene sequence under the maximum likelihood (ML) criterion [10]. Root- ing was done ...
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... for 16S rRNA gene bacterial diversity, total bacterial abundance and vibrio- specific 16S rRNA gene ...18S rRNA gene sequenc- ing targeting ciliates, a group of ...
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Development of a reference data set for assigning Streptococcus and Enterococcus species based on next generation sequencing of the 16S–23S rRNA region
... the 16S rRNA (1284- bp), sodA (430-bp), tuf (830-bp) and rpoB (740-bp) gene frag- ments was considered as unambiguous for sequences differ- ent in at least 3, 2, 3 and 3 nucleotides, ...whole ...
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Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T)
... two 16S rRNA gene copies in the genome differ from each other by up to eleven nucleotides, and differ by up to eight nucleotides from the pre- viously published 16S rRNA sequence ...
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Complete genome sequence of Weeksella virosa type strain (9751T)
... from 16S rRNA gene sequences [16-19] whereas Bergeyella zoohelcum (family Flavobacte- riaceae ) is looked at as the phenotypic sister taxon which may be confused with ...
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