Analysis of P. acnes isolates for sequence types (STs)
Multilocus Sequence Typing Analysis of Human and Animal Clostridium difficile Isolates of Various Toxigenic Types
... multilocus sequence typing (MLST) scheme was developed to study the genetic relationships and popu- lation structure of 72 Clostridium difficile isolates from various hosts, geographic sources, PCR ...
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Multilocus Sequence Types, Serotypes, and Variants of the Surface Antigen PspA in Streptococcus pneumoniae Isolates from Meningitis Patients in Poland
... pneumococcal isolates, as in many studies, the meningitis-related isolates were investigated to- gether with isolates from other types of invasive infections (5, 6, 11, 13, ...pneumoniae ...
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Prevalence of Sequence Types among Clinical and Environmental Isolates of Legionella pneumophila Serogroup 1 in the United States from 1982 to 2012
... of sequence-based typing as the gold standard for DNA-based typing of Legionella pneumophila, the Legionella laboratory at the Centers for Disease Control and Prevention (CDC) has conducted routine ...
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Global Multilocus Sequence Typing Analysis of Mycoplasma bovis Isolates Reveals Two Main Population Clusters
... multilocus sequence typing (MLST) scheme was developed and applied to the characterization of 137 ...bovis isolates from diverse geo- graphical origins, obtained from healthy or clinically infected ...
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Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
... for P. acnes, which is based on nine loci constituting 4,286 nt, showed significantly better resolution than the Belfast scheme, which is based on seven loci that constitute a total of 3,135 ...of ...
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Streptococcus pyogenes Isolates Causing Severe Infections in Norway in 2006 to 2007: emm Types, Multilocus Sequence Types, and Superantigen Profiles
... available isolates from invasive cases in Norway during 2006 to 2007 (262 isolates) were subjected to antimicrobial susceptibility testing, T serotyping, emm typing, and multilocus sequence typing ...
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Propionibacterium acnes Types I and II Represent Phylogenetically Distinct Groups
... Sequence analysis of the recA and tly genes from a selection of P. acnes strains revealed a significantly greater number of conserved type-specific base differences than sequence ...
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Multi-locus sequence type analysis of Shigellas pp. isolates from Tehran, Iran
... five sequence types with ST 152 as the dom- inant sequence type being composed of ...among sequence types for better prevention, control and treatment of ...
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<p>Characterization of antibiotic-susceptibility patterns and virulence genes of five major sequence types of <em>Escherichia coli</em> isolates cultured from extraintestinal specimens: a 1-year surveillance study from Iran</p>
... ST73 isolates showed higher rates of VFs (mean, median, and range) compared to ST69 ...ST69 isolates compared to other STs, the success of this clone can also be due to the presence of a higher rate of an ...
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Assignment of Staphylococcus Isolates to Groups by spa Typing, SmaI Macrorestriction Analysis, and Multilocus Sequence Typing
... two sequence types (PFGE04, ST8 and ST247; PFGE05, ST254; PFGE09 and PFGE11, ST239), cluster anal- ysis was not able to group respective sequence types into sep- arate groups ...for ...
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An expanded multilocus sequence typing scheme for propionibacterium acnes : investigation of 'pathogenic', 'commensal' and antibiotic resistant strains
... Genetic Analysis of Antibiotic Resistant P. acnes Isolates Acne vulgaris is a disease of the pilosebaceous follicle and has a multifactorial ...of P. acnes with acne vulgaris has ...
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Distribution of lag 1 Alleles and Sequence Based Types among Legionella pneumophila Serogroup 1 Clinical and Environmental Isolates in the United States
... and sequence-based types among clin- ical and environmental ...1 isolates from the United ...our analysis showed that the number of clinical isolates recog- nized by MAb2 was ...
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Clonal Analysis of Staphylococcus epidermidis Isolates Carrying or Lacking Biofilm Mediating Genes by Multilocus Sequence Typing
... Briefly, BURST was used to identify SLVs and their associated ancestor STs. The nucleotide sequences of the various alleles were compared to each other using Sequence Output, a Macintosh program available from the ...
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Genome analysis of environmental and clinical P. aeruginosa isolates from sequence type-1146
... CF isolates acquire hyper-mutator capabilities by mutations in mutS or mutT genes, increasing the mutation rate and consequently the rate of mutations coding for antibiotic ...resistances. Isolates of ...
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Multilocus sequence types of clinical Burkholderia pseudomallei isolates from peninsular Malaysia and their associations with disease outcomes
... Clinical outcome-genotyping association in human cases has not been clearly described in Malaysia and interpretative studies on the significance of genotyping results remain limited. In this study, tests to cluster ...
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Analysis of Escherichia coli O157 clinical isolates by multilocus sequence typing
... O157 isolates has clin- ical significance and is important from a diagnostic stand- point because in such cases, stx- and Stx-independent procedures are required to detect strains that might have lost their stx ...
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Phaeoacremonium parasiticum Infections Confirmed by β Tubulin Sequence Analysis of Case Isolates
... In summary, P. parasiticum is an uncommon cause of fungal infection, and its appropriate identification may be difficult. Due to the infrequent isolation and difficulty in making a morphological diagnosis even in ...
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Ribosomal DNA sequence analysis of Heterodera filipjeviand H. latipons isolates from Russia and comparisons with other nematode isolates
... Ribosomal DNA (ITS rDNA) sequence data for two geographically separated isolates of Heteroderajilipjevi from Russia were identical, and were 99.7% similar to rDNA sequence [r] ...
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Comparative full length genome sequence analysis of usutu virus isolates from Africa
... With the exception of CAR_1969, little genetic diver- sity was present between the sequenced USUV genomes. Therefore, the large number of substitutions observed in CAR_1969 may indicate that CAR_1969 should be con- ...
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Genome sequence analysis of DNA A from okra yellow vein mosaic virus isolates
... ClustalW analysis of DNA-A After ClustalW analysis and comparison within the DNA- A of all four biotypes it is observed that all four biotypes have sequence divergence for DNA-A genome of ...
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