Association between Bayesian genetic clusters (STRUCTURE) and molecular
HIV-1 molecular transmission clusters in nine European countries and Canada: association with demographic and clinical factors
... The study of the HIV epidemic by molecular phyloge- netics has been revolutionised by tools to assess the structure and dispersal of mainly local or regional epi- demics [6 – 8]. When viruses retain a high degree ...
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The molecular genetic basis of the association of TNFSF4 with SLE
... Barrett, J.C., Fry, B., Maller, J. and Daly, M.J. (2005). Haploview: Analysis and visualization of LD and haplotype maps. Bioinfomatics 21, 263-265. Barrett, J.C., Hansoul, S., Nicolae, D.L., Cho, J.H., Duerr, R.H., ...
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False Molecular Clusters due to Nonrandom Association of IS6110 with Mycobacterium tuberculosis
... in such cases to plot the epidemiological links between them. Clusters 1, 2, 3, and 5 were identical by PGRS typing, but the IS6110 patterns showed slight variation. This variation was due to the addition ...
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Association between molecular subtypes of colorectal cancer and patient survival
... PT ED 15 distribution of tumor subtypes among excluded cases differed from that among included cases. We used multiple imputation to account for missing tumor marker data in cases with information on one to three tumor ...
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Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics.
... signals between a biomarker dataset and a liver expression dataset, we plan to utilise summary results of multiple GWAS and eQTL studies, for a variety of cell types and ...the molecular mechanisms ...
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Molecular Dynamic Simulation of Coalescence between Silver and Palladium Clusters
... the molecular simulation work of the Ferrando ...core-shell clusters using a genetic algorithm and a many-body ...the genetic algorithm is suitable for producing the final global minimum ...
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The genetic association between type 2 diabetic and hepatocellular carcinomas
... visualizing molecular interaction networks and biological ...find clusters with the degree cut-off, haircut on, k-core, node score cut-off, max depth set as 10, ...
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A Bayesian Model for Detection of Highorder Interactions Among Genetic Variants in Genome-Wide Association Studies
... According to our analysis, these changes are indeed asso- ciated with the trait change quantitatively. Breen demon- strated that epistasis is pervasive in protein evolution by considering amino-acid usage. In this ...
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Association between genetic polymorphisms and endometrial cancer risk: a systematic review
... MoMaTEC: Molecular Markers in Treatment of Endometrial Cancer, NBCS: Norwegian Breast Cancer Study, SEARCH: UK Studies of Epidemiology and Risk factors in Cancer Heredity, NSECG: National Study of Endometrial ...
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Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms
... pleiotropy between immune response and metabolic regulatory pathways ...pleiotropy between immune and lipid phenotypes was not ...an association between blood lipids and indi- vidual ...
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Bayesian modelling in genetic association studies
... that the independent p-value of association between APOB level and APOB genotype of 1.60E-04 compares to 0.14 marginal posterior probability when the relationship is examined in a joint [r] ...
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Simultaneous Bayesian analysis of contingency tables in genetic association studies
... dependencies between the null hypotheses. In the context of genetic association studies, such strong dependencies are present at least in blocks of loci which are in linkage disequilibrium (LD) with ...
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Bayesian neural networks for detecting epistasis in genetic association studies
... of Bayesian neural networks (BNNs) for association studies to directly ad- dress some the issues with current epistasis ...complex Bayesian models, BNNs require sto- chastic sampling techniques that ...
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Bayesian model selection in complex linear systems, as illustrated in genetic association studies
... We show the simulation results in Figure 4 by plotting the trade-off between the true positives and the false positives for each method. The results show that BMS with perfect prior information always achieves ...
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Bayesian Statistical Methods for Genetic Association Studies with Case-Control and Cohort Design
... a Bayesian method with a Dirichlet prior on the haplotype ...in genetic models where the genetic sequence of a mutant offspring does not depend on the sequence of the ...the genetic processes ...
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Additive Genetic Variability and the Bayesian Alphabet
... available molecular markers in statistical models for prediction of quantitative traits has led to what could be termed a genomic-assisted selection paradigm in animal and plant ...assisted genetic ...
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Bayesian Analysis of Genetic Differentiation Between Populations
... a Bayesian method for estimating hidden population substructure using multilocus molecu- lar markers and geographical information provided by the sampling ...
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Genetic Considerations on Association between HLA and Disease
... Table 2 shows that in three of the groups studied the second hypothesis must be rejected and from Table 3 it appears that in all five the third hypothesis (a domin[r] ...
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The Association Between Childhood Leukemia and Population Mixing An Artifact of Focusing on Clusters?
... most common type of analysis is therefore to conduct aggre- gated analyses of incidence proportions, that is, comparing cases per population within fixed units of time. Because of the size of the areas typically ...
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The Association between Osteoarthritis and Occupational Clusters in the Korean Population: A Nationwide Study
... Some limitations are present in this study. First, the cross-sectional design precludes conclu- sions about causal relationships, so further prospective studies and intervention trials should be undertaken to establish a ...
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