base pairs(s)
Structural and energetic properties of the four configurations of the А•Т and G•C DNA base pairs
... DNA base pairs are isoelectronic and isomorphic structures with similar dynamic ...DNA base pair, namely transformation of the tautomerised (Löwdin’s) G*⋅C* base pair with Watson-Crick ...
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Effect of Herbicide Terbutryn on the DNA Base Pairs: Design of New Herbicide with the Minimum Toxicity
... post-emergence s-triazine carcinogen herbicide in agriculture as a control agent for most grasses and many annual broadleaf weeds in cereal and legume fields, and also under fruit ...Watson-Crick base ...
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Electronic and Geometry Studies on Swainsonine, DNA Base Pairs and its Complex
... In recent years the DFT method was applied in different branches of chemistry [4-38]. This paper presents the recently introduced approximate DFT method, DFTB technique (density functional tight-binding), empirical ...
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Computational Modeling of Interaction between Camptothecin and DNA Base pairs
... The intercalator (CTTC) and the base pairs (AT and GC) were situated in co-planar planes in such a way that the major system axes were parallel. There is special definition for the molecular geometries of ...
13
Stacking with the unnatural DNA base 6 ethynylpyridone
... selectively pairs with A and C with G, via specific hydrogen ...(C:G) base pairs have three hydrogen bonds (H-bonds), whereas thymine- adenine (T:A) base pairs have only two (see Scheme ...
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Pooled-DNA sequencing identifies novel causative variants in PSEN1, GRN and MAPT in a clinical early-onset and familial Alzheimer's disease Ibero-American cohort
... Pooled-DNA sequencing was performed as previously described [7,13]. The concentration of genomic DNA was quantified by Quant-iT™ PicoGreen (Invitrogen Corpora- tion, Carlsbad, CA, USA) reagent, and normalized amounts of ...
9
Base Pairing between the 5′ Half of ε and a cis-Acting Sequence, Φ, Makes a Contribution to the Synthesis of Minus-Strand DNA for Human Hepatitis B Virus
... to base pair with the 5 ⴕ half of ...putative base pairing between the 5 ⴕ half of and ⌽ were ...that base pairing between ⌽ and the 5 ⴕ half of contributes to efficient minus-strand DNA ...How ...
8
Polypurine tract adjacent to the U3 region of the Rous sarcoma virus genome provides a cis-acting function.
... Viral DNA clone 1090/-29, for example, refers to a v-src deletion that has lost the region from the Ball site 1,090 base pairs downstream from the EcoRI site in env to a Bal 31-created s[r] ...
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Proton transfer and tautomerism in 2 aminopurine–thymine and pyrrolocytosine–guanine base pairs
... Figure S1 Change in energy of the optimised ground state S0 geometry as a function of H1 to N1 distance of both the gas phase and solution phase PC−G base pair for the proton transfer pr[r] ...
15
Neisseria lactamica Y92–1009 complete genome sequence
... Bp: Base pairs; Cc: Clonal complex; CDS(s): CoDing sequence; COG: Clusters of Orthologous Groups; CREEs: Correia repeat enclosed elements; CRISPR: Clusters of regularly intersperced short palindromic ...
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Supramolecular assembly and metal coordination in G quadruplex structures : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Chemistry, Massey University, Manawatu, New Zealand
... G-quadruplexes are supramolecular structures formed from the self association of guanine- rich oligonucleotides. They consist of stacks of G-quartets, each of which is made of four guanine bases arranged in a cyclic, ...
140
PubMedCentral-PMC5159650.pdf
... to base-pair detection sensitivity, the absence of false positives is a notable success and consistent with the low false discovery rate observed in the TPP riboswitch, P546 domain, and RNase P RNAs ...RING-based ...
8
DNA
... The double helix ‘ladder’ of a DNA molecule is held together by ‘rungs’ made from pairs of chemicals called bases .... Base pairs hold the two strands of the DNA helix together.[r] ...
13
A computational exploration of a possible alternative to nucleotides as the basis of a genetic alphabet
... Comparing the hydrogen bond lengths determined for complementary pairs in the Het set to those in our genetic alphabet, the bond lengths for nucleotide base pairs, A:T and C:G bond lengt[r] ...
230
Across space and time: infants learn from backward and forward visual statistics
... forward base pairs ...part- pairs than base pairs, though they had appeared with equal frequency during ...backward pairs, in both the temporal and spatial ...the base ...
30
Chapter 20 - Biochemistry
... DNA contains complementary base pairs A-T in which adenine is always linked by two hydrogen bonds to thymine (A−T ).. Complementary Base Pairs: G and C[r] ...
49
Analysis, Design, and Construction of Nucleic Acid Devices
... the base-pairing graph for a molecule into distinct loops that are associ- ated with empirically measured enthalpic and entropic terms that depend on loop sequence, length, and type [15, ...the base-pairing ...
172
Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: model for TAR RNA tertiary structure.
... Nucleotide substitutions in the two base pairs of the TAR stem directly above the essential trinucleotide bulge that maintain base pairing but change sequence prevent complex formation w[r] ...
8
Theoretical study of kinetics of zipping phenomena in biomimetic polymers
... Watson-Crick base-pairing rules, to a complementary single-stranded DNA molecule, each base pair on the single-stranded DNA molecule goes from an un- bound state 共 −1 state 兲 to a bound state 共 +1 state 兲 ...
5
DNA SEQUENCE ANALYSIS OF MUTAGENICITY AND SITE SPECIFICITY OF ETHYL METHANESULFONATE IN Uvr+ AND UvrB- STRAINS OF ESCHERICHIA COLI
... An analysis of mutation frequencies with respect t o neighboring base sequence, in the two strains, shows that 06-ethylguanine lesions adjacent to A:T base pairs present bette[r] ...
9