bioinformatics analysis
Bioinformatics analysis of the structural and biochemical effect of the chemical weapon mustard gas on the P53 protein and cell death
... any bioinformatics analysis of damaged 3D structure of p53 by alkylation agents as which can demonstrate a precise modeling and simulating of them upon to ...
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Bioinformatics analysis of differentially expressed proteins in prostate cancer based on proteomics data
... In conclusion, we conducted a bioinformatics analysis of the proteomics literature on PCa and identified several PCa- associated proteins. The repeatedly reported DEPs between the P&b and H&L groups ...
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Bioinformatics analysis and molecular cloning of an extracellular serine protease from acinetobacter baumannii
... Drug resistant Acinetobacter baumannii topped the list for antibiotic resistant ‘critical’ pathogens that was released by the World Health Organisation (WHO) in February 2017. The list was intended to guide and promote ...
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Effect of phosphatidylcholine on pld gene expression level of Aspergillus fumigatus by the real time PCR method and investigations of these genes using bioinformatics analysis.
... Results: There was more significant expression for all three pld genes when A. fumigatus was grown in the presence of phospholipids in the medium. The sequence of pld genes of A. fumigatus was also interrogated using ...
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Identification of genomic expression differences between right-sided and left-sided colon cancer based on bioinformatics analysis
... integrative bioinformatics analysis was performed to research the pos- sible mechanism of the differentially expressed (DE) genes from the Gene Expression Omnibus dataset including gene ontology (GO) ...
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Bioinformatics Analysis Reveals Genes Involved in the Pathogenesis of Ameloblastoma and Keratocystic Odontogenic Tumor
... Interestingly, no study was found in the literature aiming to evaluate specifically the role of CDK1 gene, identified by our bioinformatics analysis as a leader gene in AM. Our literature search revealed a ...
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BIOINFORMATICS ANALYSIS ON SQUALENE EPOXIDASE 2 IN PANAX NOTOGINSENG
... via bioinformatics tools, the presence of predicted mechanisms can help us to understand the possible localization of the protein in the cell, the other characteristics of the protein sequence can also be studied ...
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Bioinformatics analysis of rabbit haemorrhagic disease virus genome
... the route of transmission of the virus [6]. For some ver- tebrate DNA viruses, genome-wide mutational pressure is regarded as the main determinant of codon usage rather than natural selection for specific coding triplets ...
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Identification and interaction analysis of key genes and microRNAs in hepatocellular carcinoma by bioinformatics analysis
... A total number of 64 DEMs between HCC tissue sam- ples and normal tissue samples were identified after the analyses of the GSE22058 datasets (Additional file 4), including 58 up-regulated miRNAs and 6 down- regulated ...
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Special role of JUN in papillary thyroid carcinoma based on bioinformatics analysis
... cluster analysis, as the JUN appeared again in cluster 1 and clus- ter 5 ...enrichment analysis manifested that cluster 1 was mainly concerned with “protein dimerization ...
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In silico genomic mining reveals unexplored bioactive potential of rare actinobacteria isolated from Egyptian soil
... with bioinformatics analysis using anti- SMASH software proved to be an effective approach for genomics study and sequence analysis for the selected strains (Bentley 2006; Jakubiec-Krzesniak et ...
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<p>Upregulation of STC2 in colorectal cancer and its clinicopathological significance</p>
... databases, bioinformatics analysis confirmed that STC2 was significantly increased in CRC compared with that in normal tissues ...regression analysis revealed that STC2 was an independent prognostic ...
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Genome Wide Identification and Characterization of the Dof Transcription Factor Gene Family in Phaseolus vulgaris L
... systematic bioinformatics analysis to characterize all Dof genes in common bean, which included analysis of the genome sequence, conserved protein domains, chromosomal locations, subcellular ...
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Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics
... Thermo Scientific Proteome Discoverer software suite 1.4 with the SEQUEST search engine and the mouse FASTA database from UniProt (released on October 16th, 2015) was used to analyze LC-MS/MS data. In the SEQUEST search ...
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Bioinformatics Methods for Biochemical Pathways and System Biology Analysis
... hence, analysis of signaling pathway is a central importance in study of cancers and drug ...in analysis of signaling pathways are feedback systems (positive and negative feedbacks) and cyclic ...
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Integral light-harvesting proteins in the dinoflagellate, symbiodinium sp.
... obtained bioinformatics analysis, including analysis of conserved amino acid residues and homology of translated protein sequences with known light harvesting genes from symbiotic and free-living ...
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Novel CFTR Mutations in Two Iranian Families with Severe Cystic Fibrosis
... II). Bioinformatics analysis showed that the two novel mutations were located in the transmembrane domains; these regions play a major role in the regulation of pore function in CFTR protein (CFTR admin ...
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Exploring the key genes and pathways of side population cells in human osteosarcoma using gene expression array analysis
... a bioinformatics analysis was per- ...network analysis were performed to obtain the biomarkers or the major genes related to cytogenetic pathways to OS ...
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Formononetin induces vasorelaxation in rat thoracic aorta via regulation of the PI3K/PTEN/Akt signaling pathway
... inhibitors. Bioinformatics analyses, including a Bioinformatics Analysis Tool for Molecular Mechanism of Traditional Chinese Medicine and molecular docking methods, were performed to predict ...
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Structure of an MmyB-Like Regulator from C. aurantiacus, Member of a New Transcription Factor Family Linked to Antibiotic Metabolism in Actinomycetes
... synteny analysis predicts that SCO4944 functionally relates to the adjacent SCO4945, which encodes a homolog of a mycothiol-dependent formaldehyde dehydrogenase in several ...and bioinformatics ...
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