Biological processes associated with differentially expressed genes
Data Mining in Networks of Differentially Expressed Genes during Sow Pregnancy
... revolution associated with the sequencing and availability of new tools such as large-scale gene expression microarrays gives scien- tists and breeders the opportunity to benefit from the use of much more powerful ...
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Chilling susceptibility in mungbean varieties is associated with their differentially expressed genes
... bility to stress, serve as good materials for uncovering how they differ in chilling tolerance. This study aimed to identify the ultrastructural, physiological and molecular changes to provide new insights on the ...
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Identification of aberrantly methylated differentially expressed genes targeted by differentially expressed miRNA in osteosarcoma
... tumor tissues across a range of cancers, indicating that JAK/ SAT activation correlates with worse prognosis. We next established a clue GO network of the hypermethylated genes and these pathways, and observed ...
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Differentially Expressed Genes Distributed Over Chromosomes and Implicated in Certain Biological Processes for Site Insertion Genetically Modified Rice Kemingdao
... entially expressed genes, comparative transcriptome analyses were performed for GM KMD rice and its parent rice of Xiushui11 ...680 differentially ex- pressed transcripts were identified from 30-day ...
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FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease
... mellitus genes from false positive genes in GWASs The likelihood of harboring disease-associated variants in genes with high DER values could be used to prioritize candi- date SNPs from ...
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Identification of Differentially Expressed Genes in Papillary Thyroid Cancers
... the biological behavior of PTC varies ...specific genes, including tumor suppressor genes, oncogenes, apoptosis-associated genes and other predisposing ...However, genes, ...
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Aberrantly methylated-differentially expressed genes and pathways in colorectal cancer
... expression genes were identified, which were enriched in biological processes of response to wounding or inflammation, cell proliferation and ...hub genes of PPI network were CAD, CCND1, ATM, ...
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Differentially expressed genes between systemic sclerosis and rheumatoid arthritis
... core genes and pathways that differentiate SSc and ...up-regulated genes in SSc were related to extracellular activities, whereas the down-regulated genes were mainly related to immune ...distinct ...
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Statistical Tests for Identification of Differentially Expressed Genes in Microarray Data
... of genes in the complicated biological systems, researchers usually group the genes with similar expression profiles ...of genes simultaneously and detecting those genes that are ...
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Identification of Differentially Expressed Genes with Artificial Components the acde Package
... of differentially expressed genes in gene expression data and its implementation in the acde package for ...key biological and technical assumptions summarized in Biological Scenario 2 ...
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Genes associated with polymorphic variants predicting lung function are differentially expressed during human lung development
... the genes underlying these associations may contribute to lung development potentially through differential ex- ...function associated gene mRNA levels in human fetal lung samples and used eQTL analyses to ...
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Bioinformatics analyses of differentially expressed genes associated with bisphosphonate-related osteonecrosis of the jaw in patients with multiple myeloma
... We also found that the TF of XBP1 was down-regulated in the present study. This gene product is a basic-region leucine zipper protein that is also identified as a cellular TF, which binds to an enhancer in the promoter ...
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Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes
... of processes including proliferation and invasiveness [38,39], and development of different forms of malignan- ...cer-realted genes such as BRCA1 and TP53 ...be expressed at a higher level in primary ...
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Construction of a porcine skeletal muscle cDNA microarray and its application on the identification of differentially expressed genes in different biological contexts
... of genes to be arrayed. Selecting the right genes and clones to represent these genes is crucial to successful use of in-house designed ...of genes in different developmental stages is ...
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Microarray data quality control improves the detection of differentially expressed genes
... of differentially expressed genes for the type I ...4000 genes to be differentially expressed between the two biological ...
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ORdensity: user-friendly R package to identify differentially expressed genes
... of genes, different numbers of cores and different number of permutations used in the bootstrap ...of processes working "Gene31" "Gene33" "Gene38" ...107 genes as potential DEGs and clustered them in ...
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Identification of Differentially-expressed Genes in Intestinal Gastric Cancer by Microarray Analysis
... In this study, we performed a 22 K oligonucleotide micro- array analysis on 20 intestinal GC tissue samples and 20 NATs adjacent to tumors of intestinal GC in comparison with the five normal samples, respectively. Gene ...
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Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
... independent biological replicates without a significant population ...step, genes are classified into two exclusive classes, genes with or without over-dispersion, by using an adjusted score test on ...
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Microarray data analysis: a practical approach for selecting differentially expressed genes
... Differentially expressed genes will be defined herein as gene data lying outside the normal distribution of differences with a control state, and which can not be ascribed to chance or natural ...of ...
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Microarray profile of differentially expressed genes in a monkey model of allergic asthma
... Microarray technology offers a new opportunity to gain insight into global gene-expression profiles in asthma, leading to the identification of asthma-associated genes. Microarrays are a ‘gene-chip’-based ...
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