carbohydrate-active enzymes
Peptide-based functional annotation of carbohydrate-active enzymes by conserved unique peptide patterns (CUPP)
... hypothesized to add an additional layer of information and thus obtain a more biologically relevant clustering and annotation. This methodological approach has also in part been used by cluster database at high identity ...
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Detection of carbohydrate-active enzymes and genes in a spent engine oil-perturbed agricultural soil
... the Carbohydrate-Active Enzymes (CAZy) database, and the NCBI’ s conserved do- main database (CDD; Marchler-Bauer et ...the carbohydrate-active enzymes in AB1 metagenome using a ...
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Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose
... CAZymes: carbohydrate-active enzymes; PTM: post-translational modifica- tions; SCB: sugarcane bagasse; CBM: carbohydrate-binding module; GHs: glycoside hydrolases; GTs: glycosyltransferases; ...
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Ten years of CAZypedia: : A living encyclopedia of carbohydrate-active enzymes
... The Carbohydrate-Active Enzymes (CAZymes) classification groups catalytic and substrate-binding modules of proteins responsible for the assembly and breakdown of complex carbohydrates into ...
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Proteomic Analysis of Candida albicans Cell Walls Reveals Covalently Bound Carbohydrate-Active Enzymes and Adhesins
... These enzymes are generally believed to exert their function while being linked to the plasma membrane ...such carbohydrate-active enzymes may generally become (partly) incorporated in the ...
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Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge
... these enzymes in microbial biomass deg- ...new enzymes demonstrates that metagenomic stud- ies serve as an excellent starting point to discover novel CAZymes ...secreted enzymes must act ...
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Development and application of a high throughput carbohydrate profiling technique for analyzing plant cell wall polysaccharides and carbohydrate active enzymes
... Fingerprinting of polysaccharide hydrolase product pro- files may reveal differences in enzyme activity. We in- vestigated whether the technique could reveal product differences between related xylanase enzymes. ...
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Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
... 320 carbohydrate-active enzymes, 191 lignin-related oxi- doreductases, 568 secreted proteases, and six secondary metabolism gene clusters (Additional file 3: Table S3), all of which confirm its high ...
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Discovery of the combined oxidative cleavage of plant xylan and cellulose by a new fungal polysaccharide monooxygenase
... It has been known for a long time that enzymatic deg- radation of cellulosic plant biomass can be achieved by a variety of glycoside hydrolases (GHs; EC.3.2.1.), which are all listed in the ...
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Lignin degradation potential and draft genome sequence of Trametes trogii S0301
... CAZymes: carbohydrate-active enzymes; CDS: coding region of a gene; LTR: long terminal repeat; LINEs: long interspersed nuclear elements; SINEs: short interspersed elements; COG: Orthologous Groups ...
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High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
... The genome of strain F. rivuli WB 3.3-2 T (DSM 21788 T ) comprised 4.48 Mbp on 23 scaffolds and was sequenced as part of the Genomic Encyclopedia of Bacteria and Archaea project. The genome encoded for a great var- iety ...
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Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site
... Members of the genus Geobacillus have been isolated from a wide variety of habitats worldwide and are the subject for targeted enzyme utilization in various industrial applications. Here we report the isolation and ...
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Effects of live yeast on differential genetic and functional attributes of rumen microbiota in beef cattle
... the carbohydrate-active enzymes (CAZy) database revealed that the abundance of genes coding for enzymes belonging to glycoside hydrolases, glycosyltransferases, and carbohydrate binding ...
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Comparative analysis of pre- and post-parasitic transcriptomes and mining pioneer effectors of Heterodera avenae
... Carbohydrate-active enzymes (CAZymes) secreted by nematodes to modify plant cell walls, are essentially con- sidered as critical factors for successful parasitism of plant host ...CAZy enzymes ...
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Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia
... (Carbohydrate-Active EnZymes database) [63], were enriched in both consortia by the sequential ...Such enzymes oxidize phenolic and non-phenolic aromatic compounds and can modify lignin ...
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Genetic diversity and gene expression analysis of Phytophthora pluvialis, a foliar pathogen of conifers : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy (PhD) in Genetics, Massey University, Manawatū, New Zealand
... Amplified fragment length polymorphism Analysis of molecular variance Auxiliary activity Base pair Carbohydrate binding module Carbohydrate esterase Carbohydrate-active enzymes Crinkler [r] ...
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005
... Kabisch et al. [13] investigated ’G. forsetii’ KT0803 for its ability to decompose laminarin-like, α-1,4-linked-glu- cose and alginate-like polysaccharides. The two PULs in- volved in either the decomposition of ...
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The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate
... the carbohydrate content of plant biomass within the lignin matrix [1, ...multi-domain carbohydrate- active enzymes (CAZymes) [17], as well as other acces- sory enzymes and substrate ...
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Structural and functional properties of pectin and lignin–carbohydrate complexes de-esterases: a review
... efficient enzymes for the breakdown and conversion of plant cell-wall components into valuable commercial ...of enzymes to de-esterify the plant cell-wall com- ...the carbohydrate-active ...
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Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum
... to carbohydrate-active enzymes but instead linked to biomass degradation and microbe-plant interaction ...AA1 enzymes are multicopper oxidases that use diphenols and associated constituents as ...
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