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Comparison between transcriptomics and proteomics studies

Integrated nuclear proteomics and transcriptomics identifies S100A4 as a therapeutic target in acute myeloid leukemia

Integrated nuclear proteomics and transcriptomics identifies S100A4 as a therapeutic target in acute myeloid leukemia

... hypothesized that the developmental arrest, sustained pro- liferation, and prosurvival characteristics of AML blasts may in part be mediated through misexpression or mislocalization of proteins to the nucleus. The aim ...

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Combination of label-free quantitative proteomics and transcriptomics reveals intraspecific venom variation between the two strains of Tetrastichus brontispae, a parasitoid of two invasive beetles

Combination of label-free quantitative proteomics and transcriptomics reveals intraspecific venom variation between the two strains of Tetrastichus brontispae, a parasitoid of two invasive beetles

... for proteomics analyses, which is invaluable, particularly in the absence of a sequenced ...spectrometry-based proteomics method, which enables the identification and quantification of low-abundance ...

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Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease

Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease

... correspondence between protein and mRNA levels defined by proteomics and RNA-sequencing has traditionally been found to be weak, as has been re- ported in previous work ...concordance between ...

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Establishment of sorghum cell suspension culture system for proteomics studies

Establishment of sorghum cell suspension culture system for proteomics studies

... In proteomics studies, cell sus- pension cultures provide an unlimited supply of uniform cells, which are grown in liquid ...In comparison with whole plant systems, which have a relatively longer ...

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Proteomics studies confirm the presence of alternative protein isoforms on a large scale

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

... The comparison of the two proteomics studies showed that the level of expression of alternatively spliced variants in the general proteomics analysis of Brunner was less than would be ...

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Tricks to translating TB transcriptomics

Tricks to translating TB transcriptomics

... this comparison does identify biomarkers of TB disease, in comparison to someone who is healthy, what is actually required is a disease-specific ...rigorous comparison should include a third group of ...

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Epigenetics and Proteomics Join Transcriptomics in the Quest for Tuberculosis Biomarkers

Epigenetics and Proteomics Join Transcriptomics in the Quest for Tuberculosis Biomarkers

... and proteomics) in the quest to (i) understand the biology of the TB host response and (ii) search for multi- platform biosignatures in ...differences between the infection phenotypes (LTBI versus active ...

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From marine venoms to drugs: efficiently supported by a combination of transcriptomics and proteomics

From marine venoms to drugs: efficiently supported by a combination of transcriptomics and proteomics

... collaborations between research groups, are all crucial for the successful development of marine toxins as drug ...of transcriptomics and proteomics, the contribution of marine toxins to the future ...

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Transcriptomics and proteomics analysis to identify molecular mechanisms associated with meat quality traits

Transcriptomics and proteomics analysis to identify molecular mechanisms associated with meat quality traits

... 2010, Moe et al. 2007b, Moe et al. 2008). The detected gene transcripts were involved in protein synthesis with key functions on the expression of boar taint components. Peacock et al. (2007) examined the expression ...

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Plant Aquaporins: Genome-Wide Identification, Transcriptomics, Proteomics, and Advanced Analytical Tools

Plant Aquaporins: Genome-Wide Identification, Transcriptomics, Proteomics, and Advanced Analytical Tools

... recent studies, silicic acid transport (influx and efflux) in oocytes was measured directly by atomic absorption spectrophotometry, a technical improvement that greatly facilitates the study of silicic acid ...

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Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis

... expression studies of OA 7 ...link between some of these pathways and genetic OA risk loci (see Supplementary Note, Supplementary Table ...mechanistic studies will be required before causal ...

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The Influence of Preovulatory Estradiol on Uterine Transcriptomics and Proteomics Around Maternal Recognition of Pregnancy in Beef Cattle

The Influence of Preovulatory Estradiol on Uterine Transcriptomics and Proteomics Around Maternal Recognition of Pregnancy in Beef Cattle

... intercaruncular tissue from the ipsilateral and contralateral uterine horns on days 5, 7, 13, and 16 post estrus. Day of the cycle had the greatest impact on variation in the endometrial transcriptome. There was more ...

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Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL mediated apoptosis

Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL mediated apoptosis

... transcription between the bat and human cells are influencing the host ...Previous studies have demonstrated that paramyxovi- ruses can use the accessory proteins from the P/V/C gene to inhibit apoptosis ...

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Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

... Although the molecular mechanisms underlying aphid host range differences remain elusive, it is likely both plant and aphid molecules are involved [8]. For a plant pathogen or pest to be successful on a host, it is ...

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Proteomics approaches for the studies of bone metabolism

Proteomics approaches for the studies of bone metabolism

... Osteoblasts and osteoclasts are assigned to bone remodeling, with a balance between bone formations. However, in some circumstances, bone regeneration exceeds bone self-repair capacities. This is notably often the ...

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Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach

Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach

... found between strains by DNA ...Comparative proteomics of 616 versus 701 revealed a differential abundance of proteins in various functional categories, including cell wall-associated targets and biofilm ...

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Proteomics and transcriptomics of broccoli subjected to exogenously supplied and transgenic senescence-induced cytokinin for amelioration of postharvest yellowing

Proteomics and transcriptomics of broccoli subjected to exogenously supplied and transgenic senescence-induced cytokinin for amelioration of postharvest yellowing

... differences between exogenously supplied CK and endogenously induced CK production in delaying senescence in broccoli florets Exogenously supplied CK and endogenously induced CK production shared common mechanisms ...

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Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement

Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement

... Remarkably, the nature of the carbon source employed exerted major effects in P. putida S12palB1. Effects were observed both at the global expression level and specifically for genes and proteins that are directly ...

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Transcriptomics and proteomics analyses of the PACAP38 influenced ischemic brain in permanent middle cerebral artery occlusion model mice

Transcriptomics and proteomics analyses of the PACAP38 influenced ischemic brain in permanent middle cerebral artery occlusion model mice

... report of Gabra6 regulation by PACAP. Why PACAP affects Gabra6 gene expression is unclear, but it may be related to GABA and glutamate levels, which, though not been investigated in this study, are of future interest for ...

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Comparison of fractionation proteomics for local SWATH library building

Comparison of fractionation proteomics for local SWATH library building

... ratios between each pair of libraries, highlighting proteins that are differen- tially quantified (p-value < ...correlations between the libraries can be expected, it is clear that the choice of library ...

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