DNA strand displacement
Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions
... Abstract— The use of abstract chemical reaction networks (CRNs) as a modelling and design framework for the imple- mentation of computing and control circuits using enzyme-free, entropy driven DNA strand ...
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An Image Encryption Algorithm Based on Chaos System and DNA Strand Displacement Model
... The encryption algorithm mainly consists of three parts: pixel permutation, encrypted by DNA strand displacement model, diffusion the pixel value. The pixel scrambling was used two times, ...
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Programming dynamic nonlinear biomolecular devices using DNA strand displacement reactions
... As shown in Chapter 4, a nonlinear quasi sliding mode (QSM) controller can be developed using a set of chemical reactions inspired by the ultrasensitive behaviour exhibited by a covalent modification cycle (CMC) cascade ...
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Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement
... toehold-mediated DNA strand dis- placement. Even though DNA strand displacement has been a major workhorse of dynamic DNA nanotechnology, the biophysics and molecular mechanisms ...
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Dynamic DNA strand displacement circuits
... that strand-displacement based reactions networks can be adapted to work inside cells, detecting, analyzing and changing the levels of various cellular ...The strand displacement reactions and ...
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Reversible Loading of Nanoscale Elements on a Multicomponent Supramolecular Polymer System by Using DNA Strand Displacement
... creasing DNA concentration (0–5 mol %; Table S2 and Fig- ure ...the DNA self-assembly approach on supramolecular polymers, several experiments were performed: individual writing of 5 (Au5-D4) and 15 nm ...
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Implementing nonlinear feedback controllers using DNA strand displacement reactions
... using DNA-based chemistry, and much work remains to be done to forge closer links between nonlin- ear control theory, chemical reaction network theory, and the experimental realities of nucleic acid ...
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Implementing nonlinear feedback controllers using DNA strand displacement reactions
... using DNA-based chemistry, and much work remains to be done to forge closer links between nonlin- ear control theory, chemical reaction network theory, and the experimental realities of nucleic acid ...
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Probability of Genetic Diagnosis
... single DNA calculation. Two single-stranded DNA matches were calculated based on Levenshtein distance, and the probability of DNA molecule was calculated by DNA strand ...
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PH-Controlled Assembly of DNA Tiles
... upstream DNA strand displacement circuits activated by the presence of proteins, antibodies or other relevant biomolecular inputs so that the downstream self-assembly process is ...because ...
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KINETIC CONTROL OF NUCLEIC ACID STRAND DISPLACEMENT REACTIONS
... a DNA strand displacement system has been ...of strand displacement in three ...of strand displacement to ...a DNA strand displacement system, the ...
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Studies on DNA Topology and DNA-Amyloid Beta (Aβ) peptides interaction in relevance to Alzheimer's Disease
... the DNA nicking caused various peptides and are differentially modulated by ...metals. DNA nicking of A was inhibited by aurintricarboxylic acid (ATA), a potent nuclease ...of DNA nicking by metals ...
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GKE122.pdf
... the DNA substrates (Table ...B-form DNA. However, when the displaced strand of the DNA and RNA substrates was replaced with a strand of PNA, the rate for unwinding was reduced by 25- to ...
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Replication Protein A Is Required for Meiotic Recombination in Saccharomyces cerevisiae
... genomic DNA was extracted from RFA1 (ORD- 2130), rfa1-t11 (ORD3256), rfa1-t48 (ORD5402), rad51 (ORD3200), rad55 (ORD- 3204), and rad52 (ORD- 3285) strains and digested with the restriction enzymes MluI and ...
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Evaluation of DNA Integrity of Cryopreserved Boer Goat (Capra hircus) Sperm Using Comet Assay at Various pH Conditions
... double-strand DNA breaks of the sperm for the simple reason that the neutral comet assay is a sensitive and simple technique of evaluating the double-strand DNA damage of the sperm ...the ...
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Strand displacement synthesis capability of Moloney murine leukemia virus reverse transcriptase.
... If the entire plus strand is synthesized from one initiation event, as is generally depicted, our calculated rates suggest that displacement synthesis by the minus strand through the LTR[r] ...
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Mutations That Increase In Situ Priming Also Decrease Circularization for Duck Hepatitis B Virus
... with DNA plasmids to express the in situ priming variant viruses DR1-13, DR1-Xho, and DR1-Pvu ...minus- strand DNA ...viral DNA isolated from intracellular capsids indicated not only the ex- ...
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Mechanism of replication of bacteriophage phi X174 XIX. Initiation of phi X174 viral strand DNA synthesis at internal sites on the genome.
... Initiation of 4X174 Viral Strand DNA Synthesis at Internal Sites on the Genome Received 3 June 1981/Accepted 16 November 1981 Bacteriophage PX174 viral strand DNA molecules shorter than [r] ...
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Characterisation of unusual DNA glycosylases from Trichomonas vaginalis
... to DNA, containing a pyrrolidine abasic nucleotide (pyr), to investigate how AAG was able to recognise and excise so many substrates that are not structurally similar and do not all distort the DNA ...the ...
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Analysis of the 5′ Junctions of R2 Insertions With the 28S Gene: Implications for Non-LTR Retrotransposition
... can be explained if cleavage of the second target DNA strand by these elements (ie., the strand not used to prime reverse transcription) takes place downstream of the fi[r] ...
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