energy landscape
Mapping the topography of a protein energy landscape
... Protein energy landscapes are highly complex, yet the vast majority of states within them tend to be invisible to ...the energy landscape in full breadth and remarkable ...
47
The roughness of the protein energy landscape results in anomalous diffusion of the polypeptide backbone
... previous loop formation experiments. Because of the lack of interacting side chains, these peptides are expected to have an energy landscape with reduced roughness and thus a narrower distribution of ...
19
Modulation of a protein free-energy landscape by circular permutation
... free-energy landscape of a protein requires accurate sampling of the slowest event, which consists in the crossing of the major free energy barrier between the native conformation and denatured ...
5
Complex networks and glassy dynamics: Walks in the energy landscape
... The energy landscape of a glassy system is typically rugged, made of many local minima (metastable states), whose huge number makes it difficult to reach ...the energy landscape is seen as a ...
27
Defining the Free Energy Landscape for Protein Induced Cell Membrane Curvature
... has to do with sampling rather than any onset of criticality. This is reconciled through the P (H ) distributions shown in Fig. 5.4 which show metastability in the free energy landscape of the planar versus ...
176
Energy landscape and band structure tuning in realistic MoS2/MoSe2 heterostructures
... and separation of the layers without introducing unrealistic strain. The energy landscape shows very low variations under rotation, with no strongly preferred alignments. By unfolding the spec- tral ...
10
The roughness of the protein energy landscape results in anomalous diffusion of the polypeptide backbone
... In this simple model, we assume that the radicals become trapped in close vicinity of each other immediately after bond photolysis and recombine directly upon escape from this trap. Trapping of the radicals occurs ...
9
Energy Landscape View of the Amyloid Aggregator in Protein Folding Problem
... complex energy landscape. The energy landscape theory declares that without much loss of kinetic information protein folding can be captured by one or a small number of reaction ...high ...
6
Outer membrane protein folding from an energy landscape perspective
... folding energy landscape to ensure rapid and effi- cient folding into the crowded ...the energy landscapes of OMP folding to be drawn, including how the land- scape is modulated by the asymmetric OM ...
16
The energy landscape of −1 ribosomal frameshifting
... Despite the studies cited above, a general quantitative and mecha- nistic model of −1 frameshifting is still lacking. The presence of a downstream mRNA structure has been previously shown to delay ribosomal translocation ...
12
Energy Landscape of Rwanda and Institutional Framework
... Rwanda’s energy landscape. It looked into potentials energy resources, installed capacities and available ...with energy resources, such as solar, biomass, hydro, and methane gas and ...
7
The Solway estuary: a socio-cultural evaluation of a coastal energy landscape
... renewable energy development often operate from a single, specific objective perspective and fail to fully reflect the interconnected and interdependent nature of these social- ecological systems (Symes & ...
41
Exploring the potential energy landscape over a large parameter-space
... DM would like to thank the U.S. Department of Energy for their support under con- tract no. DE-FG02-85ER40237; to Tianran Chen and Tim McCoy for their helpful remarks on this work; and to the entire Bertini, ...
32
Sampling free energy surfaces as slices by combining umbrella sampling and metadynamics
... free energy is flat or broad can be efficiently sampled using US since the sampling range of the coordinate can be controlled in ...free energy landscape that has features as in Figure 1 along ...
34
Nature and regulation of protein folding on the ribosome
... Upon emerging from the ~100 Å length of the ribosomal exit tunnel and vestibule [35], in most cases the fi rst potential interaction partner to which a nascent polypeptide segment is exposed is the surface of the ribosome ...
14
Mapping the force field of a hydrogen bonded assembly
... potential energy landscape shows that the tip-sample response at the positions of the intermolecular H bonds and intramolecular C–C bonds is surprisingly similar in terms of maximum attractive force, ...
7
Tang, Yun-Chi (2007): Structural Features of the GroEL-GroES Nano-Cage Required for Rapid Folding of Encapsulated Protein. Dissertation, LMU München: Fakultät für Chemie und Pharmazie
... The basic mechanism of GroEL/GroES action involves encapsulation of a single molecule of non-native protein in a cage-like structure, thereby allowing folding to occur unimpaired by aggregation (Mayhew et al., 1996; ...
126
Fission-fragment and neutron data traced back to the macroscopic and microscopic properties of the fissioning systems
... In the same manner as ref. [9], we consider that the features of the fission yields are determined by the sum of the macroscopic potential, given by the liquid drop model (LDM), and shell e ff ects. In the ...
9
Methylation in Nucleosome Positioning
... shows energy landscapes of the same human gene (TMEM176A) accord- ing to different models, all at ...elastic energy from the Monte Carlo simulation using the hybrid parameter set ...the energy ...
41
Enhancing the relationship between the landscape of energy transition and the ecosystem services
... Renewable Energy Technologies relate in a landscape perspective - the application of the theoretical framework and the elaboration of a method at Schouwen-Duiveland showed how it is possible to handle ...
165