Evolutionary Genomics
Evolutionary genomics and the reach of selection
... of evolutionary genomics is ever expanding: multisequence alignment, phylogenetic reconstruction, tests for selection, DNA footprinting and so ...of evolutionary genomics will be its demise, ...
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Evolutionary genomics of the pandemic 2009 H1N1 influenza viruses (pH1N 1v)
... the evolutionary history of swine influenza viruses, it is likely that multiple reassortment events resulted in emergence of the novel 2009 human H1N1 ...estimate evolutionary genomics of the novel ...
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Genetic Resources, Genome Mapping and Evolutionary Genomics of the Pig (Sus scrofa)
... in evolutionary studies not only because ex- isting pig breeds show great phenotypic varieties for morphological, physiological and behavior traits but also because the wild ancestors of domesticated pigs and a ...
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Evolutionary Genomics of Transposable Elements in the Saccharomyces sensu lato Complex
... S. cerevisiae is one of the most thoroughly studied eukaryotes in biology, and is a model organism in the study of population and evolutionary genetics (reviewed by Zeyl, 2000; Liti and Louis, 2005; Landry et al., ...
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Using Evolutionary Genomics to Elucidate Parasite Biology and Host-Pathogen Interactions
... In order to assess the significance of this family, two novel ROPK proteins were over- expressed in transgenic RH parasites: ROP21 traverses the PV and enters into the host cell cytoplasm, while ROP38 is the only ROPK ...
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Odonata (dragonflies and damselflies) as a bridge between ecology and evolutionary genomics
... In the realm of climatic thermal adaptation, Lancaster et al. [182] used a combination of laboratory experiments and field collections to investigate the genomic responses to sub-optimal temperatures (high and low) in ...
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Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
... 70. Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, ...
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Evolutionary Genomics of Cystic Fibrosis and Nosocomial Pathogens of the Mycobacterium abscessus species complex
... Through SNP based and pangenome analyses the aim of this research was to investigate whether the same genetic or functional factors drove the emergence of the three most prevalent MABSC lineages in the CF community. The ...
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ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics
... molecular evolutionary histories, demographic diver- sity and resolving phylogeny in a wide variety of species from Pinus (forest species) to Oryza sativa ...
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Evolutionary Genomics of Staphylococcus aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation
... Phenotypic biotyping has traditionally been used to differentiate bacteria occupying distinct ecological niches such as host species. For example, the capacity of Staphylococcus aureus from sheep to coagulate ruminant ...
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A High-Density Genetic Recombination Map of Sequence-Tagged Sites for Sorghum, as a Framework for Comparative Structural and Evolutionary Genomics of Tropical Grains and Grasses
... comparative genomics of Saccharum (sugarcane), Zea (maize), Oryza (rice), Pennisetum (millet, buffelgrass), the Triticeae (wheat, barley, oat, rye), and ...comparative genomics, we support and extend prior ...
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New computational methods and plant models for evolutionary genomics
... Genomics has a role to play in solving these interconnected challenges but requires a uni- fied view of Earth’s natural and anthropogenically-modified ecosystems. In particular, we must advance technological, ...
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Conservation Genomics: amalgamation of conservation genetics and ecological and evolutionary genomics (ConGenOmics)
... conservation genomics and collaborative projects between laboratories at the European ...of genomics knowledge and approaches in a conservation context, experimental study of the (genomic) mechanisms ...
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Evolutionary genomics of the recently duplicated amphioxus Hairy genes
... Hes1 , a Hairy gene which contains RBP- Jk sites in its 5’ regulatory region.In order to gain insights into the process of amplification of the Hairy family in amphioxus, to identif[r] ...
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Whither genomics?
... of genomics often called proteomics: the development and use of techniques to measure the post-trans- lational modification state, localization, binding partners, and ideally the catalytic activity of every ...
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First complete genome sequence in Arborophila and comparative genomics reveals the evolutionary adaptation of Hainan Partridge (Arborophila ardens)
... There are more than 250 species in the Galliformes in the world including 63 Galliformes species distributed in China (Shen et al. 2010; Li et al. 2010; Zheng 2017). However, there is a limited number of pheasant genomes ...
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Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways
... Gene families (ortholog, co-ortholog, and inparalog pairs) for P. brassicae and 18 other species were built using OrthoMCL (http://orthomcl.org/orthomcl/) with a Mar- kov inflation of 1.5 and a maximum e-value of 1e − 5 ...
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The Comparative Genomics of Human Respiratory Syncytial Virus Subgroups A and B: Genetic Variability and Molecular Evolutionary Dynamics
... RSV evolutionary and demographic histories were reconstructed for both the whole-genome sequences and the G gene data set using Bayes- ian genealogical inference implemented in BEAST ...for evolutionary ...
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Governance in genomics: a conceptual challenge for public health genomics law
... from genomics need a special legal ...acknowledges genomics as a part of a coherent regulatory ...of genomics in the societal discourse [7] [8] while enabling patients and consumers to profit from ...
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Chicken genomics
... Following the chicken genome, draft genome sequences of three other avian species were generated, including the zebra finch Taeniopygia guttata (Warren et al., 2010), which represents the highly diverse lineage of ...
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