Functional genes annotation and taxonomy assignation
The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes
... the genes are not included in any co-localised and duplicated ...duplicated genes is selected, each gene is described by name (HGNC), by chromosome and by base pair ...between genes in biological ...
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Original Article A database and functional annotation of NF-κB target genes
... response genes COX2, CYP7B1, FTH1, GADD45A, GADD45B, GADD45G, GCLC, GCLM, HSP90AA1, HSPA1A, MX1, NQO1, PKIB, PLA2G4A, PTGS2, PTPN1, PTPN7, PTPRJ, PTPRN2, RGS3, SESN3, SOD2, SPRY2 Transcription Factors and their ...
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A prioritization analysis of disease association by data-mining of functional annotation of human genes
... candidate genes for PC, may be a reasonable candidate ...related genes for RA and PC again with new ...40 genes were newly described as RA-related genes in the OMIM database (Supplemental ...
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Functional Annotation of Genes Overlapping Copy Number Variants in Autistic Patients: Focus on Axon Pathfinding
... 514 genes each of which was found to be deleted or dupli- cated in at least two patients (enrichment step ...for Annotation, Visualization and Integrated Discovery and Ingenuity Pathways Analysis softwares ...
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Functional Annotation of Cotesia congregata Bracovirus: Identification of Viral Genes Expressed in Parasitized Host Immune Tissues
... virulence genes have been studied in cater- pillar ...wasps. Genes for which expression could be detected corresponded to genes localized in par- ticular regions of the viral genome globally ...
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Annotation and Functional Analysis of a Unique Family of Bacteria-Like Genes in the Red Flour Beetle, Tribolium castaneum.
... the genes. Although the 3′ UTRs of these genes are less conserved, and thus more attractive candidates for primer design, they are also relatively short (~150 bp) and the sequence appears too repetitious to ...
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Structural and functional annotation of the porcine immunome
... term annotation enrichment related to immune ...immune-related genes such as IL15, JAK2, IRF2, IRF7, IRF9, IFIT 1, IFIT2, IFIT3, CD40, CD47, CD86, many STAT, PSMB and CASP gene family mem- bers, MX1, MX2, ...
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Functional Annotation of the Bovine and Porcine Genomes
... ten genes with the most nsSNPs are shown in Table 11. These genes typically encode very large proteins and are not necessarily unusually ...between genes, ranging from one nsSNP every 20 bases to one ...
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Exome-wide search and functional annotation of genes associated in patients with severe tick-borne encephalitis in a Russian population
... the functional annotation and analysis of PPIs for (1) genes, harboring rare harmful variants in TBE patients only (cases_only set, Additional file 1: Table S2) and (2) genes, harboring ...
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Identification and Functional Annotation of Alternatively Spliced Isoforms
... from genes generating multiple protein-coding splice variants ...multiexonic genes in multicellular ...the functional dynamics of splice variants in different tissues and ...
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Gene3D: comprehensive structural and functional annotation of genomes
... human genes produced transcripts that exhibit some form of domain insertion, deletion or sub- stitution whilst still remaining potentially functional ...
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Dintor: functional annotation of genomic and proteomic data
... Consistent use of software alongside well-defined ver- sions of underlying data is highly appreciated in long- standing collaborations or when addressing questions raised during the review process of a submitted manu- ...
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Systematic Functional Annotation and Visualization of Biological Networks
... candidate genes supported by network ...novel, functional modules ( Newman, 2006 ...global functional view of the ...of functional annotations has yet to be achieved systematically, the use of ...
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Gene Expression Analysis Annotation/Functional Analysis
... exon) genes • Predict introns and exons, then update the intron/exon models based the 6mer frequencies of the predicted regions, weighted by the probability the prediction is ...
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Bioinformatics Tools for Functional annotation of GWAS Practical
... 11 these genes and what their functions are. This has given you a lot of useful information, including an important clue, but you will have to link this gene to Osteoarthritis. To know more about diseases or ...
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Genome-wide association analysis and functional annotation of positional candidate genes for feed conversion efficiency and growth rate in pigs
... candidate genes from GWAS mapping near the significant SNPs confirmed a number of genes significantly associated with feed conversion efficiency and its related trait, days to 110 ...these genes to ...
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eggNOG: automated construction and annotation of orthologous groups of genes
... annotated genes in genomes or metagenomes are derived by comparative analysis and inference from existing functional knowledge via ...the functional transfer by distinguishing between orthologs and ...
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eggNOG: automated construction and annotation of orthologous groups of genes
... annotated genes in genomes or metagenomes are derived by comparative analysis and inference from existing functional knowledge via ...the functional transfer by distinguishing between orthologs and ...
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Guidelines for the functional annotation of microRNAs using the Gene Ontology
... specific genes ’ si- lencing on the cell or organism by annotating the miRNA directly with the relevant GO BP terms, something that has not been provid- ed in other resources to date but that is critical ...
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Functional coherence and annotation agreement metrics for enzyme families
... within genes inside the or- ganism's cells and used for cell maintenance and genetic trait transmission to the ...other functional sequence regions ( Pearson , 2006 ). Biochemically, genes are ...
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