Gene expression analysis by RNA sequencing
Gene expression analysis by RNA-sequencing of Longissimus dorsi muscle of pigs fed diets with differing lipid contents
... differential expression between groups, 170 up-regulated, and 189 down-regulated for treatment with higher lipid content when compared to the control ...lower expression of the genes involved in these ...
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Differential gene expression analysis tools exhibit substandard performance for long non coding RNA sequencing data
... lncRNA expression data only Results presented up to this point came from simulating, normalizing, and analyzing lncRNAs and mRNAs to- ...joint analysis of the two gene biotypes may affect ...of ...
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Statistical Methods for Gene Differential Expression Analysis of RNA-Sequencing
... depicted in Supplementary Figure 2a,b was used to benchmark different parameters. In (a), three different normalization methods: transcript counts, size factor normalization from DESEq2, and transcript-per-million (TPM) ...
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<p>Bioinformatics Analysis and RNA-Sequencing of SCAMP3 Expression and Correlated Gene Regulation in Hepatocellular Carcinoma</p>
... Methods Gene Expression Analysis Using Oncomine and HCCDB Databases The gene expression and mRNA level of SCAMP3 were evaluated using Oncomine database ...SCAMP3 gene was queried ...
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Statistical Methods for Gene Differential Expression Analysis of RNA-Sequencing
... measure gene expression, often to ask the question of what genes are differentially expressed across various biological ...model RNA-Seq quantifications in order to determine differential ...
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High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling
... virus RNA synthesised in infected cells at late time ...host RNA binding ...and RNA- Seq analysis of MHV infection still showed itself to be a powerful tool to investigate specific aspects of ...
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Deciphering Poxvirus Gene Expression by RNA Sequencing and Ribosome Profiling
... dicted RNA start sites have made the analysis of vaccinia virus gene expression ...Cluster analysis identified a subset of early mRNAs that continued to be translated at the later ...
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RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis
... RNA Sequencing Data: Hitchhiker’s Guide to Expression Analysis Van den Berge, Koen ; Hembach, Katharina M ; Soneson, Charlotte ; Tiberi, Simone ; Clement, Lieven ; Love, Michael I ; Patro, Rob ...
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RNA sequencing data : hitchhiker's guide to expression analysis
... Initial probabilistic frameworks for transcript identification and abundance estimation using EST (expressed sequence tags) data were already being developed before Illumina-based sequenc- ing (76), but Jiang & Wong (77) ...
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Weighted Gene Co-expression Network Analysis for RNA-Sequencing Data of the Varicose Veins Transcriptome
... the expression of NLRP3 inflammasome markers, since those patients often presented hypertension, diabetes and obesity, which have been associated with NLRP3 inflammasome ...extensive analysis, over ...
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Gene expression profiling of liver cancer stem cells by RNA-sequencing
... next-generation RNA sequencing (RNA-Seq), taking advantage of its superior sensitivity and capability of detecting splice variants, to sequence the whole transcriptomes of liver CD90 + CSCs and CD90 ...
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Sequencing and Gene Expression Analysis of Leishmania tropica LACK Gene.
... Total RNA Isolation System (Promega, USA) according to the manufacturer's ...Total RNA con- centration was measured at 260nm wavelength using spectrophotometer (Jenway, England), and 500ng was loaded into ...
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Cloud scale RNA sequencing differential expression analysis with Myrna
... These results suggest that the commonly assumed Poisson model is not sufficiently flexible to model the variation in RNA-Seq differential expression analysis. This might be caused by the link between ...
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SCALE: modeling allele specific gene expression by single cell RNA sequencing
... overall expression levels between the two ...(e.g., gene Dhrs7 in ...an analysis based on mean allelic ...mean expression to a change in the burst frequency and/or burst ...
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Differential Gene Expression in Coiled versus Flow Diverter Treated Aneurysms: RNA Sequencing Analysis in a Rabbit Aneurysm Model
... Another important function for aneurysm occlusion after en- dovascular treatment is wound healing, consisting subsequently of thrombus formation, myofibroblast invasion, and extracellular matrix deposition. 5,12,62 ...
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Identification of differential gene expression profile from peripheral blood cells of military pilots with hypertension by RNA sequencing analysis
... and gene number was indicated as circle size and ...to analysis deeply. The analysis results showed that the most important path- ways were apoptosis, Jak-STAT signaling pathway, toll-like receptor ...
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A tail-based test for differential expression analysis and pathway analysis in RNA-sequencing data
... Ph.D RNA sequencing data have been abundantly generated in biomedical research for biomarker discovery and pathway ...differential expression likely suffer from low power when the between-group ...
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UMI count modeling and differential expression analysis for single cell RNA sequencing
... average expression levels in the full dataset before ...the sequencing depth, have substantial influence on the number of UMIs captured for each ...the gene with lower expression [17, ...
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Efficient extraction of RNA from various Camellia species rich in secondary metabolites for deep transcriptome sequencing and gene expression analysis
... quality RNA isolation. Based on the RNA isolated from flower buds, deep transcriptome sequencing of Camellia oleifera, Camellia chekiangoleosa and Camellia brevistyla were successfully carried ...454 ...
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aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data
... DE analysis of RNA-Seq ...ent RNA-Seq analysis methods outside of ...and analysis method, the aFold DE analysis algorithm, is distinct from other current methods, because it uses ...
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