Gene expression and the cold accumulation network
Gene Expression vs. Network Attractors
... a gene expression experiment, especially on a tissue sample, the re- sulting data are not a clear image of the expression profile of the target ...average expression of certain genes in the ...
8
Neural network model of gene expression
... Boolean network model interprets gene interac- tions as connections between genes and the states of gene expression that can be either on or ...the network is calculated from the known ...
9
Identifying driver genes involving gene dysregulated expression, tissue-specific expression and gene-gene network
... the gene functional interaction network by incorporating the ex- pression similarity between mutated gene pairs in the can- cers’ related ...tissue-specific expression profiles, we used the ...
12
Variable gene expression in eukaryotes: a network perspective
... a gene is an inert object – nothing more than a string of nucleotide ...a gene become active. The first step in this activation is for the gene to be transcribed, or ...of gene ...
9
Network completion for static gene expression data.
... of gene networks from static data under multiple ...static gene networks under different conditions and investigate the differences of these network ...genetic network related to lung cancer ...
11
Integrating heterogeneous gene expression data for gene regulatory network modelling
... In this study, the four datasets retrieved from online databases had already been normalised for noise by the authors themselves, but given the different platforms used, the data values had different amplitudes. ...
13
Development of a synthetic gene network to modulate gene expression by mechanical forces
... our gene network to graded levels of shear stress, HMEC-1 endothelial cells were electroporated with the gene network (encoded on p10 and p12, Table S1), using the above described transfection ...
10
Gene co expression networks shed light into diseases of brain iron accumulation
... iron-related gene transcripts in the gene co- expression modules (nominal p-values b ...each gene g i belongs only to a single ...each gene in that list with the module in P to which ...
11
The effect of UV-B radiation on flavonoid accumulation and gene expression in Marchantia polymorpha
... large accumulation of flavonoids in the surface layers which would have given them a greater resistance due to UV-B screening when challenged at both high and low fluence treatments as compared to WT or flavone ...
242
Effects of chronic cold treatment on root elongation and gene expression in "Arabidopsis thaliana"
... for cold-climate agriculture, but also for the understanding of plant life in arctic and alpine life ...in cold environments, I studied the elongation-growth of roots and patterns of gene ...
151
Differential Connectivity in Colorectal Cancer Gene Expression Network
... Methods: In the present study, CRC gene expression datasets have been reanalyzed. Mutual differentially expressed genes across 294 normal mucosa and adjacent tumoral samples were then utilized in order to ...
13
Consensus Network Inference of Microarray Gene Expression Data
... of network algorithms and intra-modules for their ability to identify biological meaningful modular ...real gene expression data, followed by SIMoNe and RedeR (see Figure ...
234
Accumulation of damaged mitochondria in alveolar macrophages with reduced OXPHOS related gene expression in IPF
... chondrial gene expression, morphology, and oxidation levels, in alveolar macrophages in IPF that could be indir- ectly linked with IPF pathogenesis and disease progres- ...
16
The Developmental Expression of the Maize Regulatory Gene Hopi Determines Germination-Dependent Anthocyanin Accumulation
... Hopi gene is that seeds are completely devoid of pigment at maturity but show a photoinducible germination-dependent anthocyanin accumulation in aleurone and ...the expression pattern of the Hopi ...
14
The effects of UV radiation on flavonoid accumulation and gene expression in Sauvignon blanc grape berries
... Future research may try different leaf removal patterns, such as high severity of leaf removal over the fruiting zone and shoot topping to reduce leaf number per shoot. These leaf removal practices should be trialled ...
206
GENETIC TRANSFORMATION AND EXPRESSION ANALYSIS OF COLD TOLERANT GENE IN TOMATO (Solanum lycopersicum Mill.)
... 4.16.4 Expression analysis of CBF3 gene by Reverse-transcriptase (RT) PCR In order to assess whether the gene has been stably integrated only, or it has been expressed to various mRNA transcript ...
269
IL7R gene expression network associates with human healthy ageing
... IL7R expression in blood and increased IL7R expression in middle age is associated with higher prevalence of immune-related ...since gene expression levels of IL7R decreases with chronological ...
9
Arabidopsis gene co-expression network and its functional modules
... Based on the enrichment analysis of biological process and cellular component GO terms, pathway information and gene expression data, module 1 is likely to carry on the biological functi[r] ...
24
A General Framework for Weighted Gene Co-expression Network Analysis
... Since the brown module was significantly (Pearson χ 2 p-value < 0.05) enriched with ‘prognostic’ genes, i.e. with genes whose univariate Cox p-value was smaller than 0.05), we focused our attention on the brown module ...
37
Towards a network entropy formalism for gene expression data analysis
... differential expression statistical analyses are too simplistic, since they do not consider the complexity of the underlying biological system, mainly based on specific interaction between genes (at a transciptomic, ...
7