Gene Modules
Wigwams : identifying gene modules co regulated across multiple biological conditions
... of modules of co-regulated genes is a cru- cial first step towards dissecting the regulatory circuitry underlying biological ...Furthermore, modules of co-regulated genes may only show tight co-expression ...
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Identifying miRNA and gene modules of colon cancer associated with pathological stage by weighted gene co-expression network analysis
... weighted gene co-expression networks as an ...co-expression gene modules were iden- tified by using dynamic tree cut with the following major parameters: maxBlockSize of 20000, minModuleSize of 30 ...
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High throughput screen of essential gene modules in Mycobacterium tuberculosis: a bibliometric approach
... We used operon database (DOOR) to assess the essen- tial gene modules. These essential genes were fallen in 307, 326, 297, 310 and 316 operons in H37Rv, H37Ra, CDC1511, F11 and KZN1435, respectively (Table ...
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Combining Gene Phenotype Association Matrix with KEGG Pathways to Mine Gene Modules Using Data Set in GAW17
... that gene-gene interaction or gene modules (gene–gene networks) may play important roles and pro- vide more ...detect gene-gene interaction unlike other general ...
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Identification of key gene modules for human osteosarcoma by co expression analysis
... risk modules have been developed to provide significant measurement for cancer diagnosis and to develop novel treatment strategies [5, ...weighted gene co-expression network analysis (WGCNA) is a powerful ...
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A network-based method for identifying prognostic gene modules in lung squamous carcinoma
... The human developing lung [including whole embryos (WE, n = 10) and early (EEL, n = 10) and middle embryonic lung (MEL, n = 9)] and adult normal lung (NL, n = 15) samples were used in our previous investigation (National ...
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Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis
... To precisely estimate each functional module’s strength, we considered the following: (1) when calculat- ing the strength of a specific module corresponding to a particular time point, we should also consider the histor- ...
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The Origin of Population Diversity: Stochastic Interactions between a Modifier Variant and the Individual Genetic Background
... multiple gene mod- ules as stochastic ...complex gene-environment ...epistatic gene modules affect individual responses to en- vironmental cues through the hierarchical cascades of the ...
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Discovering Gene Co-Expression Modules Using Fuzzified Adjusted Rand Index
... detect gene modules and identify the hub genes within modules is Weighted Gene Co-expression Network Analysis (WGCNA) [2, ...into modules that provide insight into their collective ...
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Complete genome sequence of Terriglobus saanensis type strain SP1PR4T, an Acidobacteria from tundra soil
... of gene modules for glycoside hydrolas- es, glycosyl transferases, polysaccharide lyases, car- bohydrate esterases, and non-catalytic carbohy- drate-binding modules within the carbohydrate- active ...
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Complete genome sequence of Granulicella tundricola type strain MP5ACTX9T, an Acidobacteria from tundra soil
... including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the break- down, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based ...
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Integrative network analysis reveals different pathophysiological mechanisms of insulin resistance among Caucasians and African Americans
... weighted gene co-expression network analysis (WGCNA) ...all gene pairs, and then con- verted the correlation matrix into an unsigned adjacency matrix using a power function, so that the resulting adja- ...
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The integrative epigenomic-transcriptomic landscape of ER positive breast cancer
... same gene module or pathway may be affected in the same ...methylated gene modules underlying endothelial cell differentiation ...common gene targets (which are also likely to be part of the ...
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Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysis
... between gene i and j was defined as Sij: Sij = ...co-expression gene modules ...calculated gene significance (GS) to measure the correlation between genes and sam- ple ...within modules ...
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<p>Weighted Gene Coexpression Network Analysis Identifies Specific Modules and Hub Genes Related to Major Depression</p>
... of gene coex- pression networks and the identi fi cation of gene clusters or modules is especially useful in identifying transcriptional alterations in multigene diseases, where the phenotypic state ...
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Air pollutant chemicals and oxidized lipids exhibit genome wide synergistic effects on endothelial cells
... yellow modules. These three modules also exhibited the highest modular mean SI (Figure 3a, panel ...found modules (pathways) of synergistically expressed ...of gene modules detects ...
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A database for poplar gene co-expression analysis for systematic understanding of biological processes, including stress responses
... co-expression modules for predicting gene function and then contributes to understanding mech- anisms of biological processes, including that of stress ...a gene of interest or query words related to ...
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Endo permutation modules as sources of simple modules
... In this section we are going to determine, up to isomorphism, the sources of the simple modules ˜ L we constructed in the previous section. We know, by Theorem 30.5 in [Th], that these sources are indecomposable ...
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Hopf Modules in the Category of Yetter Drinfeld Modules
... of modules over a weak Hopf ...Hopf modules for the categorical weak Hopf algebra motivation to study quasitriangular weak Hopf algebras is the so-called biproduct construction and interpreted in the terms ...
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Regularity of the Rees Modules and the Associated Graded Modules
... In section 2 we prepare some results related to the Castelnuovo regularity of a graded module, from which we prove in theorem 1 that reg ( L ) can be characterized in terms of a minimal [r] ...
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