Genome/transcriptome
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
... staged transcriptome of ...This genome pro- vides a major resource to the scientific community for a wide range of genomic, genetic, evolutionary, biological, ecological, and epidemiological investigations, ...
18
Unraveling Fungal Radiation Resistance Regulatory Networks through the Genome Wide Transcriptome and Genetic Analyses of Cryptococcus neoformans
... through genome- wide transcriptome analysis and characterized their ...current transcriptome and functional analyses contribute to the understanding of the unique molecular mechanism of the ...
15
Transcriptome, proteome and draft genome of Euglena gracilis
... We used two different approaches to analyze the evolu- tionary origin of genes predicted from the E. gracilis transcriptome. Firstly, we used OrthoFinder [70] to iden- tify E. gracilis ortholog gene families ...
23
MOLECULAR DOCKING FOR IDENTIFICATION OF NOVEL POTENTIAL COX INHIBITORS OF SOME ISOLATED COMPOUNDS FROM CLAUSENA LANSIUM FOR ANALGESIC TREATMENT
... genome, transcriptome or proteome data, Protein design.[10, 11] The aim of the study to find the mechanism of action of the isolated compounds from Clausena lansium was explored the α-am[r] ...
8
CastorDB: a comprehensive knowledge base for Ricinus communis
... bean genome is around 350 Mb and was sequenced and assembled in 4X draft by Chan et ...whole genome shortgun strategy and is predicted to contain 31,221 proteins, although the function of most of these ...
9
De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing
... whole transcriptome revealed that, the mean GC content stood at ...draft genome assembly, which is ...its genome (26–40 %) [1] as well, indicating a closer molecular signa- ture between the draft ...
7
Definitive host influences the proteomic profile of excretory/secretory products of the trematode Echinostoma caproni
... Database search was performed using X!Tandem and MS-GF+ search engines on the E. caproni genome data- base, available on-line at http://parasite.wormbase.org/ Echinostoma_caproni_prjeb1207/Info/Index/, and on the ...
10
Clustering of Short Read Sequences for de novo Transcriptome Assembly
... the transcriptome data, a genome assembler like Velvet is not able to reconstruct full-length transcripts with different expression levels just by using one single k-mer ...
10
Definitive host influences the proteomic profile of excretory/secretory products of the trematode Echinostoma caproni
... Database search was performed using X!Tandem and MS-GF+ search engines on the E. caproni genome data- base, available on-line at http://parasite.wormbase.org/ Echinostoma_caproni_prjeb1207/Info/Index/, and on the ...
10
From genes to behavior: investigations of neurochemical signaling come of age for the model crustacean Daphnia pulex
... the genome of ...Daphnia genome, as were approximately 10 others not discovered in the initial transcriptomic study ...the transcriptome and genome are in good agreement ...additional ...
10
Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer
... on transcriptome sequencing (Figure 1a, Supplementary Table ...sample. Transcriptome sequencing of these samples revealed a SLC45A3-SKIL fusion in LuCaP-77 and a MIPEP-SKIL fusion in the clinical sample, ...
16
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution
... and the transcriptome of H. duospinosa (Additional file 7). We first assigned assembled transcripts of each species to orthologous single copy genes (OGs) published by [2] using the orthology predicting programme ...
19
In Silico Exploration of Cannabis sativa L Genome for Simple Sequence Repeats (SSRs)
... Ten cultivars of industrial non-drug hempseed, which are the most cultivated in Europe (Eletta Campana, Kc Dora, Codimono, Carmaleonte, Felina, Fibranova, Fedora, Futura, Carmagnola and Finola), were chosen and used for ...
7
Evolution of Genome-wide Gene Regulation in the Budding Yeast Cell-Division Cycle
... analyze genome-wide patterns of genetic and phenotypic diversity within and between ...in genome-wide gene expression was measured as a time-series through the mitotic cell-division cycle of 10 yeast lines, ...
258
Copaifera langsdorffii Novel Putative lncRNA: Interspecies Conservation Analysis in Adaptive Response to Different Biomes
... Figure 8: Fold change comparison of copaiba lncRNA conserved in Fabaceae species: From 1141 232.. lncRNA which aligned to multiple Fabaceae genome and transcriptome, there was[r] ...
17
Modelling signaling networks underlying plant defence
... recent genome-wide co-expression network in Arabidop- sis was generated using nearly 900 microarray data sets and includes over 18 000 genes ...used transcriptome data, experi- mentally determined ...
8
The free-living flatworm Macrostomum lignano
... high-quality genome and transcriptome assemblies, transcriptional profiling of the germline and somatic neoblasts, gene knockdown, and in situ ...and genome evolution due to its recent ...
8
ACE2 increases with age, but is not associated with sex. Asians show a similar ACE2 expression to other races. Furthermore, the frequencies of ACE2 alleles in
... the transcriptome data from the more than 1000 lung cancer samples in The Cancer Genome Atlas (TCGA) can be used to study ACE2 expression among people without ...
12
The Hidden Genomic and Transcriptomic Plasticity of Giant Marker Chromosomes in Cancer
... 2014). RGMs frequently lack functional centromeric alphoid sequences and their mitotic stability is rescued by the emer- gence of perfectly functioning analphoid neocentromeres, which might indirectly contribute to ...
11
Changes in the neuropeptide content of Biomphalaria ganglia nervous system following Schistosoma infection
... the genome [12] derived protein database (version ...the transcriptome-derived protein database, compared to 150 peptides from 69 proteins from infection ...in transcriptome derived protein ...
13