GENOME-WIDE ANALYSIS
A Genome Wide Analysis of Adhesion in Caulobacter crescentus Identifies New Regulatory and Biosynthetic Components for Holdfast Assembly
... Numerous reports have debated the roles of pili and the flagellum in surface attachment (13–15, 43, 44). Our unbiased, genome-wide analysis of adhesion unam- biguously identified both appendages as ...
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Genome wide analysis of transcription factors of hd zip gene family of arabidopsis thaliana
... performed genome wide analysis and grouped them into four ...comprehensive genome wide analysis in this study include mapping of all the transcription factors on 5 chromosomes of ...
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Genome-wide analysis of salinity-stress induced DNA methylation alterations in cotton (Gossypium hirsutum L.) using the Me-DIP sequencing technology.
... To identify the possible pathways involved in NaCl-stress responses, the DMGs were functionally clustered via Gene Ontology analysis (http://www.geneontology.org/) to explore their biological functions (Zhou and ...
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Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome
... lax genome has been first reported in the previous study [1] where 665 putative TEs were identified using the RepeatMasker program although no data curation and TE characterization were ...Trichoplax ...
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MutationalPatterns: comprehensive genome-wide analysis of mutational processes
... Different mutational characteristics, such as type, se- quence context, genomic distribution, association with genomic regions and transcriptional and replicative strand bias, are collectively meaningful for the ...
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General metabolism of Laribacter hongkongensis: a genome-wide analysis
... hongkongensis genome were annotated as described in our previous publication and classified functionally according to the COG methodol- ogy ...and analysis of the assigned function was performed by sequence ...
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DNA methylation study of fetus genome through a genome-wide analysis
... been used to enrich and capture methylated DNA frag- ments from blood and amniotic fluid samples for use in gene-specific DNA methylation studies on a genome wide scale. According to the manufacturer’s ...
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Genome-Wide Analysis of RNA Secondary Structure in Eukaryotes
... Parallel analysis of RNA structure (PARS)(45) and fragmentation sequencing (FragSeq)(104) are conceptually similar to dsRNA-/ssRNA-seq, but differ in their ...the analysis and interpretation of data ...
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Genome-wide analysis of DNA methylation in bronchial washings
... A total of 123 patients (70 non-small cell lung cancers [NSCLCs] and 53 hospital-based controls with benign lung disease) who were admitted for fiberoptic bronchoscopy or for curative surgical resection at Samsung ...
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Genome wide analysis of facial skeletal regionalization in zebrafish
... Fig. 1. Isolation of arch CNCCs for RNAseq. (A) Cells were sorted using transgenic lines that label different populations of arch CNCCs. fli1a:GFP and sox10: DsRed overlap throughout arch CNCCs (yellow); dlx5a:GFP and ...
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Genome-wide analysis of the human Alu Yb-lineage
... The Alu Yb-lineage is a ‘young’ primarily human-specific group of short interspersed element (SINE) subfamilies that have integrated throughout the human genome. In this study, we have computationally screened the ...
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Genome-wide analysis of Ollier disease: Is it all in the genes?
... (LIMMA) analysis which uses moderated t-test to detect differentially expressed genes between two groups by taking into account natural variance within these groups and correcting for multiple testing using false ...
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Genome-wide analysis of cotton miRNAs during
... degradome sequencing., Table S8: Identification of cotton PHAS loci in response to whitefly infestation., Table 569. S9: miRNA-mediated phasiRNA expression[r] ...
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Genome-Wide Analysis of a Radiation-Induced Lesion Mimic Mutant in Rice
... JA001 is a variety of LMM derived from rice IR64 using 60COγ–radiation. The mutation begins to appear as yellow–brown lesion mimic spots on rice-plant leaves after the four-leaf stage. Although the ...
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Genome wide analysis of DNA methylation patterns
... ~380,000 (soon to be expanded to over 2 million) 60-mer oligonucleotide probes. Agilent manufactures microarrays consisting of ~240,000 60-mers using inkjet technology (Wolber et al., 2006). Both arrays are dual channel ...
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Genome wide analysis of codon usage bias in Bovine Coronavirus
... In these studies, we first study the general codon usage pattern in BCoV. When the ENC’s values were calcu- lated for the complete genome of all BCoV strains, a mean value of 43.78 ± 0.07 was obtained. Since the ...
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Vector algebra in the analysis of genome wide expression data
... kinase deletion mutants after pheromone treatment [10], deletions of effectors of the Tor proteins after rapamycin treatment [11], and lexA deletions after UV irradiation [24]. When an effector of some process is ...
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Genome Wide Sensitivity Analysis of the Microsymbiont Sinorhizobium meliloti to Symbiotically Important, Defensin Like Host Peptides
... For analysis purposes, the number of reads from every transposon insertion within a given gene was combined and then expressed as a total number of reads per ...
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Genome-wide association analysis of body conformation traits in Mexican Holstein cattle using a mix of sampled and imputed SNP genotypes.
... association analysis using two different ...an analysis of QTLs covering significant SNPs shows association with milk delivery, fat delivery, and protein percentage in milk and ...
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SNP2GO: Functional Analysis of Genome-Wide Association Studies
... Strategies to identify significant GO terms are typically based on the concept of gene list enrichment (Wang et al. 2007; Chasman 2008; Guo et al. 2009; Holmans et al. 2009; Medina et al. 2009; Chen et al. 2010; Nam et ...
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