genome-wide data set
Comprehensive association analysis of candidate genes for generalized vitiligo supports XBP1, FOXP3, and TSLP
... large genome-wide data set, which has been subjected to rigorous data quality control and correction for population stratification, to specifically test for association of 33 biological ...
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Inference of disease associations with unmeasured genetic variants by combining results from genome wide association studies with linkage disequilibrium patterns in a reference data set
... reference set for genetic case- control ...Committee. Genome-wide data from the Illumina HumanHap550 Beadarray on 1430 mem- bers of the B58C was deposited by the Wellcome Trust Sanger ...
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A "Candidate Interactome" Aggregate Analysis of Genome Wide Association Data in Multiple Sclerosis
... input data used by IPA) was set to the following criteria in every analyses: consider only molecules and/or relationships where the species in object was human (or it was a chemical), and the datum was ...
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Vector algebra in the analysis of genome wide expression data
... complete set of expression profiles can be examined for the smallest number of basis vectors that can construct the nearly identical entire ...the data matrix and cannot adequately be constructed by other ...
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Genome wide analysis of DNA methylation patterns
... the data to identify significant ...a genome or an entire ...Arabidopsis genome (Zhang et ...are set up to handle Affymetrix arrays, making them a convenient resource for ...
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Batch effect correction for genome-wide methylation data with Illumina Infinium platform
... methylation data, particularly when it is conducted in the same or similar tissue ...presented data. For example, in Data- set 1, the variation of each CpG across 83 individuals was very small ...
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Genome wide association analysis of rheumatoid arthritis data via haplotype sharing
... this data set we applied two stratified haplotype-sharing tests: the cross test and the p ...the genome for each permutation. We estimated genome-wide significance by comparing the ...
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Genome wide association analysis of the QTL MAS 2012 data investigating pleiotropy
... A quality control was performed for 10000 SNPs equally spaced on five chromosomes using a minor allele frequency < 0.01 and a significant deviation from Hardy Weinberg equilibrium (p < 0.01). Markers, which ...
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Genome-wide association analysis of body conformation traits in Mexican Holstein cattle using a mix of sampled and imputed SNP genotypes.
... a genome-wide association analysis for a set of sampled and imputed SNPs with 16 conformation traits in a population of Mexican Holstein cows, revealed eight significant SNPs: one associated with the ...
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Semiparametric methods for genome wide linkage analysis of human gene expression data
... empirical genome-wide significance thresholds that are derived for each trait ...simulated data sets and is thus computationally less ...perform genome-wide linkage scans for all ...
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Genome-wide methylation data mirror ancestry information
... genotyping data from the Genes-environments & Admixture in Latino Americans (GALA II) data set, a pediatric Latino population ...ing data including quality control procedures for single ...
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Causal graph-based analysis of genome-wide association data in rheumatoid arthritis
... throughput data and its theoretical properties ...pathway set of SNPs ...conditioning set size parameter max-k = ...conditioning set is justified by empirical per- formance in a variety of ...
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Genome wide association analyses of North American Rheumatoid Arthritis Consortium and Framingham Heart Study data utilizing genome wide linkage results
... of genome-wide association analyses when linkage scans are informative ...arbitrarily set as 1.64 for the RA data (where the linkage results were NPL scores) and ...FHS data (where the ...
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A kernel-based integration of genome-wide data for clinical decision support
... term data integration has also been used as a synonym for data merging in which different data sets are conca- tenated at the database level by cross-referencing the sequence identifiers, which ...
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A "candidate interactome" aggregate analysis of genome wide association data in multiple sclerosis
... input data used by IPA) was set to the following criteria in every analyses: consider only molecules and/or relationships where the species in object was human (or it was a chemical), and the datum was ...
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Evaluating the Evidence for Transmission Distortion in Human Pedigrees
... a genome-wide scan for TD by applying the transmission disequilibrium test (TDT) genome-wide to three large sets of human pedigrees of European descent: the Framingham Heart Study (FHS), a ...
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Similarity searches in genome-wide numerical data sets
... The program psi-square derives its name from the widely employed sequence similarity program PSI-BLAST. Like PSI-BLAST, psi-square employs an iterative search strategy: the query gene defines a numerical pattern (vector) ...
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Benchmarking Relatedness Inference Methods with Genome-Wide Data from Thousands of Relatives
... Overall, the most accurate programs for first- through seventh- degree and unrelated classification are ERSA, GERMLINE, and Refined IBD—all IBD segment-based methods. The im- proved accuracy of these methods may be due to ...
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Genetic Diversity in the Modern Horse Illustrated from Genome-Wide SNP Data
... reference genome of a Thoroughbred mare ...complete data set, SNP markers that failed to genotype in at least 99% of the individuals and SNPs that had a MAF of ...per set (–indep-pairwise 100 ...
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Identification of novel therapeutics for complex diseases from genome-wide association data
... human genome that is targettable (2,494 extracted targets - Figure 2) and the 30% of pre- dicted candidate genes that are targettable (452 pre- dicted targets - Figure 5) is interesting and should be investigated ...
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