genome-wide expression profile
Genome-wide expression profile of the response to spinal cord injury in Xenopus laevis reveals extensive differences between regenerative and non-regenerative stages
... We have obtained the first genome-wide expression pro- file of the response to spinal cord injury comparing R- and NR-stages in Xenopus laevis. We identified ex- tensive differences in the responses ...
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Evaluation and prediction of hepatocellular carcinoma prognosis based on molecular classification
... 308), genome-wide Cox regression assessing the associa- tions of all the candidate genes with overall survival (OS) were conducted using R package ...the expression profile of identified ...
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Vector algebra in the analysis of genome wide expression data
... about expression profiles, or more generally, about multivariate statistical data ...an expression profile is regarded as just one point in a high-dimensional ...
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Genome wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus
... created genome files as ...tent genome annotation in different ...demonstrating genome misannotation and demonstrate how this phenomenon is adversely affecting the identification and characterization ...
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Genome wide gene expression analysis in mouse embryonic stem cells
... mouse genome and the set of differentially transcribed genes revealed whether clusters of genes of a specific functional group were enriched in the differentially expressed ...our expression data, we drew a ...
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Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis
... DNA expression associated with in ovo elec- troporation on endogenous gene expression of the developing chicken embryo, we used microarray analysis to compare the gene expression profile of ...
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RNA sequencing of identical twins discordant for autism reveals blood-based signatures implicating immune and transcriptional dysregulation
... polygenic profile scores derived from large-scale genome- wide association studies [1, 7], there exists a gap in our ability to build mechanistic models of how genetic and non-genetic risk factors ...
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Circulation long non-coding RNAs act as biomarkers for predicting tumorigenesis and metastasis in hepatocellular carcinoma
... the genome-wide lncRNAs expression profile in plasma from HCC patients before operation and the corresponding plasma after operation by comparing with the cancer-free controls, we sought to ...
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Molecular network profiling of U373MG human glioblastoma cells following induction of apoptosis by novel marine-derived anti-cancer 1,2,3,4-tetrahydroisoquinoline alkaloids
... the genome-wide gene expression profile and molecular net- works by using pathway analysis tools of ...the expression of 417 genes and elevated the levels of 84 genes, while the com- ...
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Genome wide expression profiles of subchondral bone in osteoarthritis
... gene expression study were about 5 mm deep under the calcified cartilage, which included the sub- chondral bone plate and subarticular ...gene expression cannot easily be con- firmed, all of the cell types ...
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Chronic arsenic trioxide exposure leads to enhanced aggressiveness via Met oncogene addiction in cancer cells
... whole genome gene expression arrays, which revealed that Met overexpression by chronic ATO exposure was based on the transcriptional regulation via activation of ...
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Genome-wide identification and expression analysis of DNA demethylase family in cotton
... DNA methylation is an epigenetic modification widely found in bacteria, plants and animals (Chen et al. 2015; Manning et al. 2006; Zhong et al. 2013). It involves gene silencing, transposon suppression, genomic ...
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Systematic review of genome wide gene expression studies of bipolar disorder
... levels genome-wide in a range of tissues and across dis- ease ...examine expression differences in BP ver- sus unaffected controls with the goal of identifying genes or pathways of genes that are up ...
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Genome-Wide Mutagenesis of Dengue Virus Reveals Plasticity of the NS1 Protein and Enables Generation of Infectious Tagged Reporter Viruses
... viral genome and/or encoded protein in a single ...viral genome with next-generation sequencing (NGS) to quantify the degree to which regions within viral genomes tolerate mutations in cell culture models ...
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Targeting mitochondrial biogenesis to overcome drug resistance to MAPK inhibitors
... analyzed genome-wide gene expression data for 947 human cancer cell lines collected for the Cancer Cell Line Encyclopedia (CCLE) project ...lower expression of MitoBiogenesis (Figure ...
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Genome-wide gene expression analysis of chemoresistant pulmonary carcinoid cells
... Increased expression of hypoxia-inducible gene domain family member 1A (HIG1/ HIGD1A) and aryl hydrocarbon receptor nuclear translocator 2 (ARNT2) together with the changes in regard to glucose metabolization ...
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Genome-Wide Analysis on Inbreeding Effects on Gene Expression in Drosophila melanogaster
... Array hybridization and scanning: Fifteen micrograms of cRNA was fragmented at 94° for 35 min in a final volume of 40 ml in a buffer containing 40 m m Tris-acetate pH 8.1, 100 m m KOAc, and 30 m m MgOAc. Next, 260 m l of ...
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Comparison of the effects of the oral anticancer platinum(IV) complexes oxoplatin and metabolite cis-diammine-tetrachlorido-platinum(IV) on global gene expression of NCI-H526 cells
... gene expression patterns of control and treated NCI-H526 cells revealed significant differences in the expression pattern of target genes for cisplatin and ...gene expression was assessed using ...
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<p>Genome-wide DNA methylation and RNA expression profiles identified RIPK3 as a differentially methylated gene in Chlamydia pneumoniae infection lung carcinoma patients in China</p>
... This study explored the epigenetic mechanism of Cpn infection in lung cancer. Our integrative methylome and tran- scriptome analyses revealed that Cpn infection contributed to methylation-mediated changes in RIPK3. ...
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Identification of candidate genes for congenital splay leg in piglets by alternative analysis of DNA microarray data
... compared genome wide gene expression of three hind leg muscles ...Porcine Genome Array (Affymetrix) in order to identify candidate genes for the ...The expression of six selected genes ...
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