genome-wide gene expression analysis
Genome-Wide Gene Expression Analysis Identifies the Proto-oncogene Tyrosine-Protein Kinase Src as a Crucial Virulence Determinant of Infectious Laryngotracheitis Virus in Chicken Cells
... available, genome-wide gene expression data for chicken embryo lung cells infected with a different virulent ILTV strain at an MOI of ...
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Genome-wide gene expression analysis of chemoresistant pulmonary carcinoid cells
... microarray analysis (Applied Biosystems 1700) were carried out following the manufacturer’s chemiluminescence detection kit ...Statistical Analysis of Microarray (false discovery rate of 10%; Stanford ...
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Genome wide gene expression analysis in mouse embryonic stem cells
... the expression level of undifferentiated cell markers previously shown to indicate undifferentiated ESCs or ESC self-renewal ...the gene expression levels of Nanog, Oct3/4 and Rex1 at days 0, 1, 2, ...
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Genomic Approaches to Understanding Variable Expressivity in Alagille Syndrome and Genetic Susceptibility to Biliary Atresia
... including genome-wide gene expression analysis, genome-wide association (GWA) studies of single nucleotide polymorphisms (SNPs) and copy number variation (CNVs), and exome ...
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Genome-wide analysis of salinity-stress induced DNA methylation alterations in cotton (Gossypium hirsutum L.) using the Me-DIP sequencing technology.
... al., 1993; Kakutani et al., 1995). Therefore, DNA methylation was regarded as a defense and regulatory mechanism against some selfish DNA elements (Elhamamsy, 2016). The entire genomic distribution of the ...
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Genome wide analysis of spatiotemporal gene expression patterns during early embryogenesis in rice
... normalized expression value. In addition, Pearson correlation analysis with all of the arrays using normalized data for looking at similarity between replicates was performed in Excel ...fold-change ...
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Genome-Wide Analysis of a Radiation-Induced Lesion Mimic Mutant in Rice
... LMM could affect the qualitative or quantitative traits through many pathways (Chen et al. 2013). Although there a lot of genes were mutant in JA001, the lesion mimic phenotype of JA001 may be due to one or two major ...
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Genome wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus
... a gene/protein exists, and hence, once a CDS has been annotated, it is difficult or impossible to conclusively prove that it does not ...inconsistent genome annotation where a given gene encoded a ...
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Genome wide transcriptional analyses in Anopheles mosquitoes reveal an unexpected association between salivary gland gene expression and insecticide resistance
... D7 expression [12]. For this analysis, the sample set was expanded to include all ...D7r4 expression (fold change 0–2 relative to unexposed controls) were compared to fifteen individuals displaying ...
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QTL/microarray approach using pathway information
... of genome-wide profiling for a large number of ...a gene set analysis (GSA) to assess the differential expression of pre-defined gene sets that share common biological ...novel ...
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Differential gene expression in Anopheles stephensi following infection with drug resistant Plasmodium yoelii
... differential gene expression in Anopheles following in- fection with drug-resistant Plasmodium, we conducted a genome-wide transcriptomic profiling analysis of ...
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Semiparametric methods for genome wide linkage analysis of human gene expression data
... The gene expression data provided to GAW15 include 14 three-generation CEPH (Centre d'Etude du Polymor- phisme Humain) Utah families, each of which consists of 13 or 14 ...performed ...
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Genome wide sparse canonical correlation of gene expression with genotypes
... gene expression. Studies mapping genetic determinants of expression profiles are often carried out considering the expression of one gene at a time, an approach that is computationally ...
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Sex, age and generation effects on genome wide linkage analysis of gene expression in transformed lymphoblasts
... (eQTL) analysis was performed using MERLIN-REGRESS v ...linkage analysis was used (10,203,534 ...linkage analysis, using MERLIN, was used to analyze the X chromosome because MERLIN- REGRESS cannot ...
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Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis
... and expression profiles across different tissues, at various developmental stages and under stress ...whole genome investigation, we identified twenty-two NCX proteins encoded by fifteen genes in rice and ...
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Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease
... Microarray expression profiling was available for 111 cases and 40 controls [21] (GEO Series ...32,831 expression probes, 24,495 had genomic location in- formation and were retained for integration with ...
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Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma
... extraction. Gene expression data was derived from NimbleGen human whole genome expression microarrays (array 2005_04-20_Human_60 mer_1in2) containing 380,000 probes with an average of 11 ...
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Genome-Wide Analysis on Inbreeding Effects on Gene Expression in Drosophila melanogaster
... of gene expression (Figure 1). The reason why the variance in gene expression is higher with fast compared to slower inbreeding may be that selection is more efficient the slower the rate of ...
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Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis
... Independent of the experimental organism, electro- poration involves microinjecting a gene expression construct, typically into a natural body cavity such as the neural tube. Subsequently, electrodes are ...
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Hutter, Stephan (2007): Natural variation in Drosophila melanogaster: A survey of genome-wide DNA sequence polymorphism and gene expression diversity, and the development of new bioinformatic tools. Dissertation, LMU München: Fakultät für Biologie
... first analysis with BAGEL, we performed a second run where we removed spots which did not show a significant signal of expression and therefore did not present meaningful red/green ...a gene was ...
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