Homology with the IgE-Binding factor gene
Explicit equilibrium modeling of transcription factor binding and gene regulation
... cooperative binding of proteins X and Y to DNA can be separated thermodynamically into the formation of an XY dimer and the binding of that dimer to DNA; this is thermo- dynamically equivalent to protein X ...
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Maize IgE binding proteins: each plant a different profile?
... the rapid conversion of alanine to pyruvate during recov- ery from low-oxygen stress, in Arabidopsis thaliana [15]. Spots 13 and 14 highest score matches Homogentisate 1,2-dioxygenase, an enzyme involved in several ...
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Involvement of nuclear factor I-binding sites in control of Akv virus gene expression.
... The ability of these sites to bind crude and purified protein fractions with nuclear factor I activity was analyzed, and the role of the sites within and outside the repeat region for co[r] ...
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Temporal Hierarchy of Gene Expression Mediated by Transcription Factor Binding Affinity and Activation Dynamics
... the binding affinity of the PhoB two-component response regulator (RR) to target promoters impacts the level and timing of expression of PhoB-regulated ...transcription factor (TF)-binding ...the ...
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Extracting transcription factor binding sites from unaligned gene sequences with statistical models
... of unaligned DNA sequences. The prediction results sug- gest that, overall, our algorithm outperforms MDscan since the predicted motifs are more consistent with previ- ously known specificities reported in the literature ...
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Quantifying the functional and evolutionary relationships among sequences, transcription factor binding and gene expression
... TF-DNA binding [33, 26], and may therefore underlie evolution- ary changes in TF ...that binding divergence is correlated with changes in binding sites for the pioneer factor Zelda, which ...
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Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution
... TF binding to output gene expression using F1 inter-strain mouse crosses revealed a number of ...TF binding differences are dominantly inherited. Although most binding influenced by cis-acting ...
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Naturally occurring mutations in the human 5 lipoxygenase gene promoter that modify transcription factor binding and reporter gene transcription
... scription factor binding region (212–88 bp upstream from the ATG start site); this region contains a number of nucleotide sequences consistent with binding motifs for a number of well established ...
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Binding Motif And Transcription Factor
... for binding motif transcription factors bind dna strand and number of clusters would result in good motif instance, such as the ...mammalian gene transcription factor binding sites are after ...
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The pattern of development for gene expression of sterol regulatory element binding transcription factor 1 in pigs
... E-box binding but destroys sterol reg- ulatory element-1 binding prevents leptin gene transactivation but has no effect on the increase in FAS promoter ...this gene. These results indicate ...
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ISOLATION AND CHARACTERIZATION OF A C-REPEAT BINDING FACTOR GENE FROM TEVANG-1 MAIZE CULTIVAR
... ZmCBF3tv gene and putative protein The nucleotide composition of the isolated gene was obtained by sequencing the recombinant vector with ...isolated gene was compared to the reference gene ...
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Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters
... of gene expression in ...TF binding to ...those binding the promoter of the same ...that gene regulation may be additive through multiple regulatory ...
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Conserved Gene Regulatory Function of the Carboxy-Terminal Domain of Dictyostelid C-Module-Binding Factor
... in gene expression was considered to be indicative of CbfA-regulated gene ...CbfA-regulated gene was abpF (205-fold differential expression), which codes for an actin-binding protein that is ...
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Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
... TF binding prediction is the usage 81 of hit-based motif screening algorithms, such as Fimo ...affinity binding sites may be lost as they often do not pass the ...low-affinity binding is essential in ...
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Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
... Information about open-chromatin fraction in the cell popu- lation improves prediction Recall from the Materials and Methods section that TEPIC has been tested with four different annotation setups to es- timate TF ...
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AllergoOncology: Generating a canine anti-cancer IgE against the epidermal growth factor receptor (EGFR):Generating a canine anticancer IgE against the epidermal growth factor receptor
... anti-dog IgE column was made by crosslinking 1 mg goat anti-dog IgE (cat# NB7343, Novus Biologicals, Littleton, Colo) to HiTrap Protein G HP column (GE Healthcare Life Sciences) in the presence of 50-fold ...
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Sgs1 Binding to Rad51 Stimulates Homology-Directed DNA Repair in Saccharomyces cerevisiae
... of homology-dependent ...Sgs1 binding to the strand-exchange factor Rad51, we have identified a single amino acid change at the C-terminal of the helicase core of Sgs1 that disrupts Rad51 ...
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Known allergen structures predict Schistosoma mansoni IgE-binding antigens in human infection
... The IgE response has been associated with both allergic reactions and immunity to meta- zoan ...structural homology to IgE-binding antigens from metazoan parasites and that this ...
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Identification and validation of regulatory SNPs that modulate transcription factor chromatin binding and gene expression in prostate cancer
... TF binding and subsequently affect target gene expression in ...controlling gene expression programs during prostate development, tumorigenesis and/or progression [51], we reasoned that genetic ...
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Mapping of Transcription Factor Binding Region of Kappa Casein (CSN3) Gene in Iranian Bacterianus and Dromedaries Camels
... 1727 | Page Sequence variation within Alpha S1 5′-flanking region has been widely studied in several species like cattle involving mainly B. taurus (Prinzenberg et al,. 2005 and Kuss et al,. 2005) yak (Bai et al,. 2010), ...
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