Multi-locus sequence type (MLST)
Multi-locus sequence type analysis of Shigellas pp. isolates from Tehran, Iran
... five sequence types with ST 152 as the dom- inant sequence type being composed of ...among sequence types for better prevention, control and treatment of ...
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Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation
... 3.2. Development of an MLST scheme for At. caldus Using the above pipeline At. caldus type strain ATCC 51756 and At. caldus SM-1 were cross-compared and candi- date MLST markers pinpointed (Fig. 2). Using an E ...
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A Fast, Accurate, and Automated Workflow for Multi Locus Sequence Typing of Bacterial Isolates
... and type unknown microbial ...imal sequence checking, the ST of each sample can be obtained in five minutes or ...rate sequence typing of a wide variety of ...
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Multi Locus sequence analysis reveals profound enetic diversity among isolates of the human athogen bartonella bacilliformis
... a multi-locus sequence typing (MLST) scheme for ...eight sequence types among these isolates and the delineation of these was generally congruent with those of the previously described typing ...
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Genotyping of amino acid-producing Corynebacterium glutamicum strains based on multi-locus sequence typing (MLST) scheme
... Several strains previously regarded as Brevibacterium and Corynebacterium species had been classified to C. glutamicum [3,4]. Our analysis extends the conclusion and proposes that C. glutamicum should also contain ...
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Iranian clonal population of Salmonella enterica serovar Enteritidis, char- acterized by multi-locus sequence typing (MLST) method
... molecular type are likely to be de- scended from a younger ancestor and those belonging to more distant ancestors are expected to differ in type unless a relative higher clonal population would be under ...
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Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004
... homologous type 11 sequences without any nucleotide differences in seven housekeeping ...Although type 11 ...field type variation, it is likely to be a stable lineage derived from an ancestor before ...
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Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France
... Multi locus sequence typing MLST was performed on the eight reference strains and 42 field ...pulso- type identified by NotI or AscI digestion was chosen in order to take into account the ...
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Evaluating the impacts of stressors of Pseudomonas syringae pathovar tomato on the effectiveness of multi-locus variable number tandem repeat analysis and multi-locus sequence typing in microbial forensic investigations
... reliably type the organ- ism in an investigation involving the pathogen; however, similar experiments should be performed in the field to ensure that other adverse natural conditions will ...
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Multi Virulence Locus Sequence Typing of Staphylococcus lugdunensis Generates Results Consistent with a Clonal Population Structure and Is Reliable for Epidemiological Typing
... 63. Sivadon V, Rottman M, Quincampoix JC, Prunier E, de Mazancourt P, Bernard L, Lortat-Jacob A, Piriou P, Judet T, Gaillard JL. 2006. Poly- morphism of the cell wall-anchoring domain of the autolysin-adhesin AtlE and ...
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Multi locus sequence typing of oenological Saccharomyces cerevisiae strains
... In this work we used MLST analysis for molecular typing of several 89.. cerevisiae wine yeast strains, including isolates from sherry and sparkling wines, 90.[r] ...
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Comparison of classical multi locus sequence typing software for next generation sequencing data
... SRST2 is that it takes a 100 base flanking region around the locus from a reference genome, reducing the impact of cov- erage drop off at the ends of the sequences. Additionally, it can assign predicted serovars ...
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Multiplex PCR Genotyping Assay That Distinguishes between Isolates of Clostridium perfringens Type A Carrying a Chromosomal Enterotoxin Gene (cpe) Locus, a Plasmid cpe Locus with an IS1470 Like Sequence, or a Plasmid cpe Locus with an IS1151 Sequence
... cpe-positive type A isolates yield PCR products when puri- fied DNA is used as the DNA template but not when colony lysates are used as the DNA ...between type A isolates carrying the two different plasmid ...
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Multi-locus sequence analysis of Mycoplasma carpicolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia
... on Multi-Locus Sequence Analysis (MLSA) has been developed to trace new epidemics and to elucidate whether the recently identified cases in continental Asia were due to recent importation of ...H2 ...
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Multi locus sequence typing of Escherichia coli isolates with acquired ampC genes and ampC promoter mutations
... Alonso et al. 2016). We therefore set out to investigate whether this was also the case in other parts of the South West of England. Multi-locus sequence typing (MLST) was used to determine the ...
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Multi-locus sequence typing (MLST) of C. jejuni infections in the United States Patrick Kwan, PhD
... – Similar to the Dutch model, compares the number of human cases caused by different subtypes with their prevalence in each source, but with additional weighting explicitly added for e[r] ...
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Multi-locus sequence analysis of mycoplasma capricolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia
... H2 locus, a polymorphic region already in use as a molecular marker for Mccp evolution, was complemented with seven new loci selected according to the analysis of polymorphisms observed among the genome sequences ...
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Exploration of genetic diversity of Bacillus spp. from industrial shrimp ponds in Vietnam by multi-locus sequence typing
... Xuan The Le 1,4 , Dung Tien Pham 2 , Tuan Anh Pham 3 , Tung Thanh Tran 2 , Thanh Huu Khuat 2 , Hoa Quang Le 2* and Ut Ngoc Vu 4 Abstract Bacillus is a diverse genus consisting of more than 200 species with extensive ...
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DNA sequence variability at the rplX locus of Bacillus subtilis
... Even though the number of variable sites is small, they are sufficient to suggest that the relationships among these rplX sequences are different from those inferred [r] ...
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Sequence Variation and Haplotype Structure at the Human HFE Locus
... HFE locus encodes an HLA class-I-type protein important in iron regulation and segregates replace- ment mutations that give rise to the most common form of genetic ...HFE locus and experimentally ...
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