Multi-locus sequence typing
Comparison of classical multi locus sequence typing software for next generation sequencing data
... Sequence typing is rapidly transitioning from traditional sequencing methods to using whole-genome ...classical multi-locus sequence typing ...
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Multi locus sequence typing of Escherichia coli isolates with acquired ampC genes and ampC promoter mutations
... Alonso et al. 2016). We therefore set out to investigate whether this was also the case in other parts of the South West of England. Multi-locus sequence typing (MLST) was used to determine ...
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Exploration of genetic diversity of Bacillus spp. from industrial shrimp ponds in Vietnam by multi-locus sequence typing
... Xuan The Le 1,4 , Dung Tien Pham 2 , Tuan Anh Pham 3 , Tung Thanh Tran 2 , Thanh Huu Khuat 2 , Hoa Quang Le 2* and Ut Ngoc Vu 4 Abstract Bacillus is a diverse genus consisting of more than 200 species with extensive ...
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Genotyping of amino acid-producing Corynebacterium glutamicum strains based on multi-locus sequence typing (MLST) scheme
... molecular typing techniques, multi-locus sequence typing (MLST) is currently the most popular one ...or sequence type ...
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Evaluating the impacts of stressors of Pseudomonas syringae pathovar tomato on the effectiveness of multi-locus variable number tandem repeat analysis and multi-locus sequence typing in microbial forensic investigations
... of multi-locus variable number tandem repeat (VNTR) analysis (MLVA) and multi-locus sequence typing (MLST) in investigations involving plant pathogens may be problematic because ...
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Iranian clonal population of Salmonella enterica serovar Enteritidis, char- acterized by multi-locus sequence typing (MLST) method
... of Multi locus sequence typing of Salmonella Enteritidis population in Iran our study characterized all isolates as a unique ST (ST 11) which was in notable contrast with diversity observed by ...
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Multi-locus sequence typing of Salmonella enterica subsp. enterica serovar Enteritidis strains in Japan between 1973 and 2004
... MCJ: Multi-locus sequence typing: a tool for global ...multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix ...
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Multi locus sequence typing of Ehrlichia ruminantium strains from geographically diverse origins and collected in Amblyomma variegatum from Uganda
... Although multi-locus sequence typing (MLST) has been recently developed, only strains from geographically restricted collections have been analysed so ...
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Classification of Bartonella Strains Associated with Straw Colored Fruit Bats (Eidolon helvum) across Africa Using a Multi locus Sequence Typing Platform
... applied multi-locus sequence typing, or MLST, to study the genetic differences of straw-colored fruit bat (Eidolon helvum)-associated Bartonella ...
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Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France
... Ségolène Calvez 1,2* , Catherine Fournel 1,2 , Diane-Gaëlle Douet 3 and Patrick Daniel 4 Abstract Yersinia ruckeri is a pathogen that has an impact on aquaculture worldwide. The disease caused by this bacterial species, ...
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Multi locus sequence typing of oenological Saccharomyces cerevisiae strains
... In this work we used MLST analysis for molecular typing of several 89.. cerevisiae wine yeast strains, including isolates from sherry and sparkling wines, 90.[r] ...
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Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation
... 3. Results 3.1. Comparative genomics-based MLST marker selection pipeline implementation To facilitate and improve the MLST marker selection process, a bioinformatic pipeline was implemented that iden- tifies single copy ...
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A Fast, Accurate, and Automated Workflow for Multi Locus Sequence Typing of Bacterial Isolates
... population. This integrated workflow significantly reduces the time required to analyze and type unknown microbial strains. Data analysis in the current MLST workflow requires 4–5 hours of post-analysis data retrieval ...
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Multi-locus sequence typing (MLST) of C. jejuni infections in the United States Patrick Kwan, PhD
... – Similar to the Dutch model, compares the number of human cases caused by different subtypes with their prevalence in each source, but with additional weighting explicitly added for e[r] ...
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Multi Virulence Locus Sequence Typing of Staphylococcus lugdunensis Generates Results Consistent with a Clonal Population Structure and Is Reliable for Epidemiological Typing
... by multi-virulence-locus sequence typing (MVLST), targeting seven known or putative virulence-associated loci (atlL R2 , atlL R3 , hlb, isdJ, SLUG_09050, SLUG_16930, and ...multilocus ...
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Multi Virulence Locus Sequence Typing Identifies Single Nucleotide Polymorphisms Which Differentiate Epidemic Clones and Outbreak Strains of Listeria monocytogenes
... no sequence variation was observed in the virulence loci between outbreaks spanning up to 11 years (1989 ...gene sequence conservation within epidemic clones is that virulence genes carry critical functions ...
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MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
... MLST sequence repertoire from public sources removing dupli- cated or chimeric sequences (see ‘Materials and Methods’ section) and we provide the user with the output of this ini- tial ...MLST sequence ...
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Resolution of Ambiguous HLA Genotyping in Korean by Multi Group Specific Sequence Based Typing
... HLA-A typing with 10 primer sets for exons 2 and 3, 10 and the AVITA plus as- say expanded this strategy to HLA-B, -C, and -DRB1 typing with the inclusion of exons 1, 4, 5 of HLA-A and -C loci and exon 4 of ...
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Molecular epidemiology of Neisseria gonorrhoeae strains circulating in Indonesia using multi locus variable number tandem repeat analysis (MLVA) and Neisseria gonorrhoeae multi antigen sequence typing (NG MAST) techniques
... b men who have sex with men (including transwomen who did not undergo genital reassignment surgery; c MLVA = Multiple-Locus Variable Number Tandem Repeat (VNTR) Analysis, a cluster was defined as a group of five ...
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Multi-locus sequence type analysis of Shigellas pp. isolates from Tehran, Iran
... many typing methods based on phe- notypic or genotypic properties of bacteria that are selected based on the epidemiological ...the sequence type of each ...molecular typing of bacteria via internet ...
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