multilocus sequence analysis
Multilocus Sequence Analysis of Clinical “Candidatus Neoehrlichia mikurensis” Strains from Europe
... a multilocus sequence analysis (MLSA) protocol to characterize the genetic diversity of clinical ...clpB sequence from the sequences of the other 11 ...three sequence types of ...
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Multilocus Sequence Analysis of Isolates of Achromobacter from Patients with Cystic Fibrosis Reveals Infecting Species Other than Achromobacter xylosoxidans
... A multilocus sequence analysis (MLSA) scheme was developed for characterization of strains and species from the genus Achro- mobacter, which are increasingly recovered from patients with cystic ...
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Phylogeny and Identification of Nocardia Species on the Basis of Multilocus Sequence Analysis
... acid analysis to discriminate many species, and the unreliability of biochemical ...through multilocus sequence analysis (MLSA) of gyrase B of the  subunit of DNA topoisomerase (gyrB), 16S ...
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Complete Deletion of the Fucose Operon in Haemophilus influenzae Is Associated with a Cluster in Multilocus Sequence Analysis Based Phylogenetic Group II Related to Haemophilus haemolyticus: Implications for Identification and Typing
... by multilocus sequence analysis (MLSA) and near-full-length 16S rRNA gene ...rRNA sequence was inconclusive for three ...influenzae multilocus sequence type (MLST) scheme, have ...
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Multilocus Sequence Analysis and rpoB Sequencing of Mycobacterium abscessus (Sensu Lato) Strains
... rpoB sequence to the MLSA-concatenated sequence (total sequence, 4,823 bp) had little effect on the clustering of ...gene sequence and rpoB sequence were discordant ...MLSA ...
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High Resolution Genotyping of Chlamydia trachomatis Strains by Multilocus Sequence Analysis
... MLST sequence pattern. Furthermore, ompA analysis only slightly enhanced the discrimination of ...to analysis of the five candidate ...and sequence length are ...the sequence ...
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Multilocus Sequence Analysis Provides Insights into Molecular Epidemiology of Chlamydia pecorum Infections in Australian Sheep, Cattle, and Koalas
... ST49 with other koala C. pecorum STs (Fig. 1), provides a potential snapshot of the risk of cross-host transmission between Australian livestock and koalas. Similar observations were reported previ- ously in phylogenetic ...
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Multilocus Sequence Analysis for Typing Leptospira interrogans and Leptospira kirschneri
... of sequence-based ap- proaches that can yield much deeper information than previ- ous methods about relationships between strains ...Nucleotide sequence-based methods are more suitable than conventional ...
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Phylogenetic Analysis of a Virulent Borrelia Species Isolated from Patients with Relapsing Fever
... Multilocus sequence analysis (MLSA) was used to clarify the taxonomic status of a virulent Borrelia organism previously isolated from patients with relapsing fever and from ticks in Spain that is ...
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Borrelia carolinensis sp nov , a New (14th) Member of the Borrelia burgdorferi Sensu Lato Complex from the Southeastern Region of the United States
... A multilocus sequence analysis of the rrf-rrl intergenic spacer, 16S rRNA, fla, ospA, and p66 genes were used to clarify the taxonomic status of the new group of ...phylogenetic analysis shows ...
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Gibbsiella papilionis Kim et al 2013 is a later heterotypic synonym of gibbsiella dentisursi Saito et al 2013
... multilocus sequence analysis MLSA based on partial sequences of gyrB, rpoB, infB and.. atpD was performed on the oak isolates as well as the type strains of the three known.[r] ...
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First Case of Actinomycetoma in France Due to a Novel Nocardia Species, Nocardia boironii sp. nov.
... analyses. Multilocus sequence analysis (MLSA) using four housekeeping genes (16S rRNA gene, secA1, hsp65, and sod) combined with phylogenetic analysis revealed that the strain OFN ...
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Novel Brucella Strain (BO1) Associated with a Prosthetic Breast Implant Infection
... phenotypic analysis, including biochemical and antimicrobial susceptibility testing, cellular fatty acid analysis, and molecular analysis based on DNA-DNA reassociation and the presence of multiple ...
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Homology Analysis of Pathogenic Yersinia Species Yersinia enterocolitica, Yersinia pseudotuberculosis, and Yersinia pestis Based on Multilocus Sequence Typing
... losis and Y. pestis, and the other that included pathogenic and nonpathogenic Y. enterocolitica strains. Population genetics stud- ies have shown that Y. pestis recently evolved from Y. pseudotuber- culosis O:1b about ...
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Molecular identification of Tilletia controversa and T. caries, the causal agent of wheat dwarf and common bunt
... Abstract : Common and dwarf bunt of wheat are recognized as being caused by three closely related species, Tilletia caries and T. laevis as common bunt, and T. controversa as dwarf bunt. The morphological characteristics ...
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Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
... Other measurements of the extent of LGT within a species suggests that recombination plays a much greater role than mutation in generating diversity in MLST loci for B. pseudomallei. We measured the standardized index of ...
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<p>Phenotypic and Genotypic Characteristics of <em>Clostridium difficile</em> Isolates in Patients with Type 2 Diabetes in Iran</p>
... Patients and Methods: A total of 104 hospitalized patients with type 2 diabetes and nosocomial diarrhea were included in the current study over a 2-year period (2015 – 2017). C. dif fi cile isolates were characterized by ...
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Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes
... rDNA sequence analysis is the partial sequencing of protein- encoding ...relationships, sequence data from more than one gene should be used to reduce the possibly of ambiguities caused by genetic ...
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Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus
... locus sequence typing (MLST) database for ...(cgMLST) analysis as one of the most straightforward ways to explore complex genomic data in an epidemiological con- ...This analysis resulted in the ...
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Francisella tularensis Strain Typing Using Multiple Locus, Variable Number Tandem Repeat Analysis
... The application of MLVA to the genetic characterization of F. tularensis isolates has provided significant strain discrimina- tory power. Using relatively few markers against these North American isolates, our data ...
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