Normalized gene expression values for 50 genes from (Golub 1999)
Identifying driver genes involving gene dysregulated expression, tissue-specific expression and gene-gene network
... driver genes which can promote cancer evolvement and de- ...driver genes with low vari- ation frequency and highly depend on the error-prone net- ...cancer genes forming functional modules tend to be ...
12
Onychophoran Hox genes and the evolution of arthropod Hox gene expression
... spatial expression pattern of the onychophoran Hox genes may contribute to a combinatorial Hox code that is involved in giving each segment its ...gradient-like expression of Ubx may give posterior ...
11
Investigation of candidate genes for osteoarthritis based on gene expression profiles
... of gene expression pro fi les is now providing new opportunities to uncover potential disease-related genes of SM associated with progression of ...the gene expression pro fi les of SM ...
5
The Role of Regulatory Genes During Maize Domestication: Evidence From Nucleotide Polymorphism and Gene Expression
... candidate genes with low diversity in maize inbreds has resulted in a much higher proportion of identified putative se- lected ...regulatory genes are overrepresented among selected ...regulatory ...
11
Gene expression variation and expression quantitative trait mapping of human chromosome 21 genes
... in gene expression are likely to account for an important fraction of phenotypic differences, including susceptibility to common ...in gene expression levels in humans and other organisms, and ...
9
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity
... AUC values listed in Table 2 were obtained using data in which log signals under 0 were set to 0 though two preprocessing algo- rithms (PLIER and mmgMOS) are designed to output both positive and negative log ...
7
Selecting informative genes from leukemia gene expression data using a hybrid approach for cancer classification
... throughput gene profiling has led to the hope that this technol- ogy could provide an efficient and accurate means of diagnos- ing and classifying ...mative genes for cancer ...informative genes that ...
5
Ranking candidate disease genes from gene expression and protein interaction: A katz-centrality based approach
... ranked genes could be bridges to relate different diseases with each ...global gene expression data and genome scale protein-protein interaction network for the prioritization of candidate disease ...
9
Gene-body CG methylation and divergent expression of duplicate genes in rice
... of gene body CG methylation in the OsMet1-2 null mutant reduces original expression differences between duplicate ...relative expression levels of duplicates intrinsic of WT rice, we selected 2790 ...
13
Perturbation-response genes reveal signaling footprints in cancer gene expression
... pathways from gene expression. However, mapping gene expression to pathway components disregards the effect of post- translational modi fi cations, and downstream signatures represent ...
11
Evaluation of Reference Genes for Differential Gene Expression Study of Bovine Tuberculosis
... Results from this study showed that SDHA was found to be the most stable reference gene, across the infection status (bTB positive or negative) and across experimental conditions (4 hours or overnight ...
8
Amplified and Homozygously Deleted Genes in Glioblastoma: Impact on Gene Expression Levels
... deleted gene at chromosome 9p21 for which a high correlation was found between DNA CN values and its mRNA expression ...MTAP gene deletion have been previously found in several tumors, ...
11
A sequence-based approach to identify reference genes for gene expression analysis
... that genes commonly used for reference in qPCR experimentation were sub-optimal, and identified novel, more consistently expressed genes to be superior as reference ...reference genes such as ACTB ...
11
Nasal gene expression differentiates COPD from controls and overlaps bronchial gene expression
... nasal gene expression signature and the verification of this signa- ture in two independent ...COPD-induced gene expression, hereby avoiding contamination of the results caused by differ- ...
10
From gene expression to gene regulatory networks in Arabidopsis thaliana
... Here, gene regulatory networks are learned for Arabidopsis from NASC microarray ...Starting from a small set of initial genes of interest, a network is learned in the form of a static Bayesian ...
19
From gene expression to gene regulatory networks in Arabidopsis thaliana
... Here, gene regulatory networks are learned for Arabidopsis from NASC microarray ...Starting from a small set of initial genes of interest, a network is learned in the form of a static Bayesian ...
19
From gene expression to gene regulatory networks in Arabidopsis thaliana
... quantized genes have very similar entropy, which is important in the model selection phase later in the incre- mental network learning ...ple gene expression histograms and decision boundaries for ...
18
Identifying Gene Regulatory Networks from Gene Expression Data
... of gene expression of all the genes in the network following a single gene ...expressed genes between the pairs of network ...or gene network ...tables from the input data ...
30
Extracting expression modules from perturbational gene expression compendia
... ential expression p-value cutoff in the discretization step instead of a fold-change cutoff, we repeated the analysis using a |log 2 ratio| discretization threshold of 1 (two-fold up- or ...clustered genes ...
16
Expression of Homeobox Gene HLX and its Downstream Target Genes are Altered in Placentae From Discordant Twin Pregnancies
... excised from central cotyledons, excluding the peripheral margin and infarcted ...sample from each pla- centa was snap-frozen and stored at -80 ° C for RNA and protein extraction, or fixed in 10% formalin ...
9