Open Reading Frame identification
Identification of the E5 open reading frame of human papillomavirus type 16.
... A comparison of the amino acid sequences of the E5 ORFs from HPV-6b, -16, and -18 and BPV-1 revealed that the homology resided primarily in the large number of hydrophobic residues (appr[r] ...
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Identification and Prioritisation of Variants in the Short Open-Reading Frame Regions of the Human Genome
... The subset of variants in sORF regions were found using tabix on bash, and each dataset was individually partitioned into training and test data (before combining), to ensure a similar p[r] ...
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Identification and characterisation of an overlapping open reading frame (ORF4) within the murine norovirus genome
... Nora M c Fadden PhD Thesis 2010 Mice in cohort 1 were weighed daily, and blood and faeces were taken on days 0, 3 and 7 post-infection, which is comparable to what had taken place during the 10,000 TCID 50 infectious ...
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Identification of hepatitis B virus polypeptides encoded by the entire pre-s open reading frame.
... Figure 1 illustrates the method and construction of an expression vector that directs the synthesis of a tribrid fusion protein containing 108 amino acids of the 174 amino acids potentia[r] ...
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Identification and characterization of the herpes simplex virus type 1 protein encoded by the UL37 open reading frame.
... Elution of HSV-1-infected cell proteins from single-stranded DNA agarose columns by using a linear KCI gradient demonstrated that the UL37 protein elutes from this matrix at a salt conce[r] ...
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Identification and characterization of the herpes simplex virus type 1 virion protein encoded by the UL35 open reading frame.
... The 12-kDa protein recognized by the TrpE-UL35 antiserum was associated with purified HSV-1 virions and type A and B capsids, suggesting that the UL35 ORF may encode the 12-kDa capsid pr[r] ...
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Identification of the human papillomavirus type 6b L1 open reading frame protein in condylomas and corresponding antibodies in human sera.
... We therefore generated two prepara- tions of HPV-6 antigen based on the sequence of the Li ORF, which codes for the major capsid protein (9, 26): a fusion protein containing 92% of the L[r] ...
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Identification of Kaposin (Open Reading Frame K12) as a Human Herpesvirus 8 (Kaposi’s Sarcoma-Associated Herpesvirus) Transforming Gene
... T0.7 is found in all stages in nearly all KS tumors of different epidemiologic origin, including AIDS-associated, African endemic, and classical KS (K. A. Staskus et al., J. Virol. 71:715–719, 1997), as well as in a body ...
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Identification of polypeptides encoded in open reading frame 1b of the putative polymerase gene of the murine coronavirus mouse hepatitis virus A59.
... The use of in vitro translation of genome RNA and immunoprecipitation with antisera directed against various regions of the polypeptides encoded in gene A should make it possible to stud[r] ...
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Attenuation of Marek's Disease Virus by Deletion of Open Reading Frame RLORF4 but Not RLORF5a
... recent identification and cloning of RLORF4 and the finding that four of six attenuated strains of MDV contained deletions within RLORF4 suggested that it is involved in the attenuation process of ...
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Human Herpesvirus 6 Open Reading Frame U83 Encodes a Functional Chemokine
... In addition, there are numerous orphan chemokine receptors whose ligands have not been identified. The receptor(s) for the U83 protein remains to be determined. At present, it is not known whether the U83 protein binds ...
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Temperature-dependent regulation of upstream open reading frame translation in S. cerevisiae
... upstream open reading frames using ribosome profiling data To better understand the effects of changes in temperature on start site selection, we identified a set of 1367 uORFs that show evidence of ...
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Identification of a Novel Bovine Herpesvirus 1 Transcript Containing a Small Open Reading Frame That Is Expressed in Trigeminal Ganglia of Latently Infected Cattle
... DISCUSSION This report describes the identification of a transcript that contains a 135-amino-acid open reading frame, ORF-E. The ORF-E transcript is antisense to the LR gene and was consis- ...
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Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES)
... expression profile. However, they are still subjected to hybridization issues such as reaction kinetics and probe mismatches as former methods. Also, microarrays cannot adequately address expression profiles of samples ...
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The Equine Herpesvirus 2 E1 Open Reading Frame Encodes a Functional Chemokine Receptor
... contain open reading frames (ORFs) that encode potential homologs of eucaryotic ...the identification of the CC chemokine eotaxin as a functional ligand for the EHV-2 E1 ...
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Open Reading Frame Example
... an open reading frame affects which is an orf is ever translated into amino acid chain length for learning how a ...an open reading example sentence does python? Out of the ...
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Telomeric Silencing of an Open Reading Frame in Saccharomyces cerevisiae
... both the mRNA and its frameshifted open coding region are longer than that found for the active IMD2 gene. Genome-array expression studies with different SIR mutants and histone depletion revealed that telomere- ...
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A perspective on mammalian upstream open reading frame function
... Upstream open reading frame Translational control a b s t r a c t Post-transcriptional control makes a major contribution to the overall regulation of gene expression ...upstream open ...
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Mutational analysis of the human immunodeficiency virus vpr open reading frame.
... Growth kinetics of a i'pr mutant (Af2) and wild-type virus (432) in three human lymphocyte cell lines. Values at the top indicate day after infection[r] ...
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Nonsense mutation in open reading frame E2 of bovine papillomavirus DNA.
... Full-length viral DNA containing the mutation induced only approximately 2% of the transformed foci of mouse C127 cells that were induced by wild-type DNA.. In a different transformation[r] ...
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