pathway enrichment
Identification of epigenetically altered genes and potential gene targets in melanoma using bioinformatic methods
... In the current study, we downloaded and reanalyzed the microarray data of GSE31879 from a public database. The differentially expressed genes (DEGs), differentially methylated positions (DMPs), and differentially ...
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Comprehensive and integrative analysis identifies microRNA 106 as a novel non invasive biomarker for detection of gastric cancer
... KEGG pathway enrichment analysis by separately mapping the target mRNAs of miR-106a and miR-106b to the online tool DAVID (Database for Anno- tation, Visualization, and Integrated Discovery) ...
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Original Article Exploring the multiple miliary osteoma cutis-related genes by gene expression analysis
... KEGG pathway enrichment analysis were conducted for DEGs by DAVID Functional Annotation Bioinformatics Microarray ...GO enrichment analysis, and KEGG pathway enrichment, which showed ...
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Exosomes derived from Wharton's jelly of human umbilical cord mesenchymal stem cells reduce osteocyte apoptosis in glucocorticoid-induced osteonecrosis of the femoral head in rats via the miR-21-PTEN-AKT signalling pathway
... KEGG pathway enrichment analysis, and the AKT signalling pathway was found to be up-regulated when MLO-Y4 cells were cultured with exosomes ...
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Quantitative analysis of differentially expressed proteins in psoriasis vulgaris using tandem mass tags and parallel reaction monitoring
... (KEGG) pathway enrichment analysis revealed that the DEPs were mainly enriched in the activation of immune cells (drug metabolism pathway, NOD-like pathway, and IL-17 pathway), cell ...
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Identification of key genes and pathways in human clear cell renal cell carcinoma (ccRCC) by co-expression analysis
... adjacency between gene m and gene n). β was a soft-thresholding parameter that could emphasize strong correlations between genes and penalize weak correlations. Next, the adjacency was transformed into topological ...
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Identification of Significant Genes and Pathways Related to Lung Cancer via Statistical Methods
... is pathway enrichment analysis, through which pathways related to lung cancer can be ...in pathway session, whereas many resources can support the findings at gene level and it was only due to the ...
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Original Article Bioinformatics analysis of differentially expressed miRNAs in plasma of respiratory distress syndrome
... The Database for Annotation, Visualization and Integrated Discovery (DAVID, (http://david. niaid.nih.gov) [9] has been developed for sys- tematically mapping a great number of genes to associated pathways and Gene ...
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RETRACTED ARTICLE: Gene expression profiling analysis of the putamen for the investigation of compensatory mechanisms in Parkinson’s disease
... signaling pathway and phosphatidylinositol signaling system have been demonstrated to be related studies have shown that phosphorylated gap junction protein connexin 43 is selectively enhanced in the basal ganglia ...
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Differentially expressed genes between systemic sclerosis and rheumatoid arthritis
... KEGG pathway enrichment analyses of the identified DEGs demonstrated six key significantly enriched path- ways, including ECM – receptor interaction and primary immunodeficiency, which is in line with the ...
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Ets-1 global gene expression profile reveals associations with metabolism and oxidative stress in ovarian and breast cancers
... functional pathway enrichment analysis (Figure 1) included oxidoreductase activity relating to fatty acid desaturation (cluster 1), unsaturated fatty acid metabolism (cluster 2), D-Aspartate:2-oxoglutarate ...
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Identification of potential candidate genes for hypertensive nephropathy based on gene expression profile
... KEGG pathway enrichment analysis for DEGs in the PPI network was performed based on ...each pathway term was adjusted into the FDR by using Bonferroni correction ...and pathway groups were ...
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Original Article Discovery of microarray-identified genes associated with the progression of cervical intraepithelial neoplasia
... using pathway enrichment, biological annotation and protein/ gene interaction analyses, three pathways with 14 differentially expressed genes related to CIN progression were ...naling pathway may be ...
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Identification of genes associated with methotrexate resistance in methotrexate-resistant osteosarcoma cell lines
... Methods: The raw transcription microarray data GSE16089 collected from three MTX-sensitive osteosarcoma (Saos-2) cell samples and three MTX-resistant osteosarcoma (Saos-2) cell samples were downloaded from Gene ...
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Whole-genome sequence of Schistosoma haematobium
... major enrichment in pathways linked to hematophagia (including superoxide dismutase, saposin, cathepsin B and ferritin) and egg production (including lipid metabolism, protein synthesis and eggshell-specific ...
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Singer, Katharina Julia (2018): MicroRNA profiling of purified alveolar epithelial type II cells from normal mice. Dissertation, LMU München: Medizinische Fakultät
... For pathway enrichment analysis the 111 miRNAs detected at similar levels in sATII and pATII were restricted to 40 miRNAs with 662 experimentally validated ...
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PubMedCentral-PMC4724325.pdf
... The pathway enrichment analysis here were exploratory only; they suggested that future studies might hypothesize differential methylation gene sets that (a) regulate inflammation and cell damage via ...
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Identification of ageing-associated naturally occurring peptides in human urine
... the pathway analysis also enabled the identification of processes affected in pathological ...ageing, pathway enrichment analysis suggested an elevated degradation of insulin-like growth factor ...
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Network analysis reveals potential markers for pediatric adrenocortical carcinoma
... analysis. Pathway enrichment analysis demonstrated that cell cycle, terpenoid backbone biosynthesis, and oocyte meiosis were overrepresented amid upregulated ...
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Identification of key pathways and genes in <em>TP53 </em>mutation acute myeloid leukemia: evidence from bioinformatics analysis
... KEGG pathway enrichment analysis (Table S3 and Figure 5A–D, ...KEGG pathway enrichment by DAVID suggested that the top three module genes were mainly related to neuroactive ligand-receptor ...
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