phylogenetic analyses
Molecular and phylogenetic analyses of a new Amphotropic murine leukemia virus (MuLV 1313)
... locale. Phylogenetic analyses of each gene separately and collectively as the whole genome, provide additional evi- dence that the "highly conserved" gag and pol genes of the two distinct ...
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Phylogenetic analyses and taxonomic studies of Senecioninae : southern African Senecio section Senecio
... Members of sect. Annui in Harvey’s Flora Capensis (1865) found during fieldwork and included in this study are S. arenarius, S. cakilefolius, S. elegans, S. erysimoides, S. glutinarius, S. glutinosus, S. littoreus, S. ...
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Evolutionary History of Cucumber Mosaic Virus Deduced by Phylogenetic Analyses
... Phylogenetic analyses by using maximum-parsimony meth- ods are often used to resolve taxonomic questions in virology ...these analyses can also reveal important infor- mation about the evolutionary ...
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Nucleotide and phylogenetic analyses of the Chlamydia trachomatis ompA gene indicates it is a hotspot for mutation
... examined. The non-coding region preceding the 5 ’ end (CT681-2) had a 21 bp deletion in strains B/Har36, B/ TW5, F/IC-CAL3. Since it was not found in B/Tunis 864 or Ba/Apache2, this indicates an association among these ...
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Genetic and Phylogenetic Analyses of Influenza A H1N1pdm Virus in Buenos Aires, Argentina
... Molecular characterizations. (i) Polymorphism and phylogenetic analyses. Sequences of the full-length genomes and HA, NA, and M gene segments were obtained from the isolated viruses following the ...
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Diversity and Molecular Phylogenetic Analyses of Parmelioid Lichens (Parmeliaceae, Ascomycota) In Kenya
... Alternatively, all species of clade II could be transferred to an emended genus Parmelinella. Taxonomic changes are withheld until additional samples of the species of Parmelinella are available for sequencing and ...
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First outbreaks and phylogenetic analyses of avian influenza H9N2 viruses isolated from poultry flocks in Morocco
... The present study investigated the first introduction and isolation of avian H9N2 in Morocco. Although H9N2 vi- ruses are considered as low pathogenic, the recent Moroccan situation showed that it could cause indeed very ...
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Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont harboring trypanosomatid
... for phylogenetic analyses were selected by similarity searches of the ...in phylogenetic analysis were deposited in GenBank (KP689381- ...likelihood phylogenetic analyses were performed ...
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Phylogenetic analyses and taxonomy of Anthelidae (Lepidoptera)
... Over time, good advice and support came from many parts of the world, and I like to thank all people involved. David Morris (ANU, BoZo) taught me the hands-on basics and tricks in the sequencing lab of BoZo, having an ...
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Article: Epidemiological investigation and phylogenetic analyses of contagious ecthyma virus from goat in Bangladesh
... The phylogenetic indicates that the ORF virus isolated from sheep and goat are closely related to each other but clustered separately. Sheep virus was found to have 95.20-97.20% homology with goat viruses. On the ...
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Phylogenetic Analyses and Biogeography of Trilliaceae
... In addition, there is only one globally widespread species, Paris quadrifolia (which is found from Ireland to Mongolia and Siberia); there are two widespread gene[r] ...
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Phylogenetic analyses within three sections of the genus Vicia
... V. kalakhensis and V. galilaea (9.18 pg and 6.52 pg). The observed discrepancy between the RAPD clustering of Vicia species and their appropriate 1C values might be related to different evolutionary paths of particular ...
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Detection and phylogenetic analyses of spike genes in porcine epidemic diarrhea virus strains circulating in China in 2016–2017
... In the phylogenetic tree based on the S gene, the S protein-encoding genes indicated that all 11 PEDV epidemic strains were of subtype G2 (Fig. 1). More specifically, CH/HNXY/2017, CH/HNCD/2017, CH/ HNHB/2017, ...
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Nucleotide sequence of feline immunodeficiency virus: classification of Japanese isolates into two subtypes which are distinct from non-Japanese subtypes.
... 27). Phylogenetic analyses of gag and pol gene products of FIV and those of other lentiviruses reveal that FIV is more closely related to equine infectious anemia virus and Maedi-visna vi- rus than to ...
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Characterization of rickettsiae in ticks in northeastern China
... In addition, we also detected a new variant “Ca. R. jing- xinensis”. Phylogenetic analyses based on both ompA and gltA gene sequences indicated this may be a new species. However, additional studies are ...
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Prevalence and phylogenetic analysis of hepatitis E virus in pigs, wild boars, roe deer, red deer and moose in Lithuania
... samples. Phylogenetic analysis based on a 348-nucleotide-long region of the HEV ORF2 showed that all obtained sequences detected in Lithuanian domestic pigs and wildlife belonged to genotype ...and ...
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Phylogenetic analysis of the Australasian paralysis ticks and their relatives (Ixodidae: Ixodes: Sternalixodes)
... above. Phylogenetic analyses were performed on individual cox1 and ITS-2 datasets using Maximum Likelihood (ML), Neighbour-Joining (NJ) and BI ...NJ analyses were performed using MEGA ...ITS-2) ...
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Characterisation of rhizobia and studies on N₂ fixation of common weed legumes in New Zealand
... Results from the phylogenetic analyses based on the maximum likelihood trees inferred for the housekeeping and symbiosis genes (Figures 5.1 - 5.4) indicated that the thirty-six rhizobial isolates belonged ...
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Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe
... b). Phylogenetic analyses were based on Maximum Parsimony (MP) for all the individual loci and on both MP and Bayesian Inference (BI) for the multi-locus ...generate phylogenetic trees under optimal ...
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Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches
... PTP analyses are summarized in ...phylogenetic analyses. Both PTP and multiple-threshold GMYC analyses recovered six ...by phylogenetic analyses, but multiple-threshold GMYC and ...
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