Phylogenetic background
Determination of antibiotic resistance genes in relation to phylogenetic background in Escherichia coli isolates from fecal samples of healthy pet cats in Kerman city
... genes, phylogenetic groups and anti-microbial resistance patterns of Escherichia coli isolates from fecal samples of healthy pet cats in Kerman ...method. Phylogenetic background of the isolates was ...
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Relationship of Phylogenetic Background, Biofilm Production, and Time to Detection of Growth in Blood Culture Vials with Clinical Variables and Prognosis Associated with Escherichia coli Bacteremia
... non-B2 phylogenetic background (A or D in particu- lar) and resistance to ciprofloxacin or trimethoprim-sulfameth- oxazole or multidrug resistance has previously been recog- nized (15, ...
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Association of Virulence Genotype with Phylogenetic Background in Comparison to Different Seropathotypes of Shiga Toxin Producing Escherichia coli Isolates
... with phylogenetic background were assessed among the strains in comparison with the different ...The phylogenetic analysis showed that STEC strains segregated mainly in phylogenetic group B1 ...
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Phylogenetic background of enterotoxigenic and enteroinvasive Escherichia coli from patients with diarrhea in Sirjan, Iran
... the phylogenetic background among the strains of geographically distinct populations in different stud- ies may be due to the use of antibiotics, differences arising from different sampling areas, dietary ...
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Distribution of class d oxacillinases amongst third generation cephalosporin resistant nosocomial uropathogenic escherichia coli isolates, their phylogenetic background and clonal analysis
... Phylogenetic background of ...their phylogenetic background, acquisition of multiple replicon type plasmids and β-lactamase resistant genes ...
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Virulence Factors in Urinary Escherichia coli Strains: Phylogenetic Background and Quinolone and Fluoroquinolone Resistance
... The hypothesis that lower expression of type 1 fimbriae would be an intrinsic characteristic of a group of strains was rejected. The different groups, in fact, showed the same capac- ity for phenotypic expression, and in ...
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Detection of Fimbrial Genes, Antibiotic Resistance Profile and Phylogenetic Background of Uropathogenic E. coli Isolated from Clinical Samples in Karaj City, Iran
... An epidemiological relation between an E. coli gene and UTIs recommend that the gene itself encodes a factor contributing to urovirulence or has a genetic link to such a gene. So, the genes involved in UTIs are valuable ...
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Virulence Genotypes and Phylogenetic Background of Escherichia coli Serogroup O6 Isolates from Humans, Dogs, and Cats
... and H types encountered for that allele, underwent partial sequence analysis for six additional housekeeping genes, as did the putative group A O6 isolate. A maximum-parsimony tree based on concatenated sequences across ...
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Correlation between the genomic o454-nlpD region polymorphisms, virulence gene equipment and phylogenetic group of extraintestinal Escherichia coli (ExPEC) enables pathotyping irrespective of host, disease and source of isolation
... Moreover, phylogenetic analysis of EHEC and EPEC strains, as well as strains of the Ecor collection, revealed that the mutS gene itself may be frequently subject to horizontal transfer and recombination during the ...
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Phylogenetic typing and detection of extended-spectrum β-lactamases in Escherichia coli isolates from broiler chickens in Ahvaz, Iran
... the phylogenetic background, to establish the prevalence of ESBL genes encoding TEM, SHV and CTX-M-15, and to analyze the phylogenetic group distribution of the resistance genes in ...
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Phylogenetic grouping, epidemiological typing, analysis of virulence genes, and antimicrobial susceptibility of Escherichia coli isolated from healthy broilers in Japan
... of phylogenetic background, virulence-associated gene profiling, multi-locus sequence typing (MLST), and antimicrobial resistance ...profiling. Phylogenetic analysis demonstrated that 35 of the 78 ...
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Determination of Extended-Spectrum Beta-Lactamases Genes and Antibiotic Resistance Patterns in Escherichia coli Isolates from Healthy Cats
... There are limited data about the diversity and prevalence of resistance to broad- spectrum β-lactams among Enterobacteria- ceae isolated from companion animals in Iran. This study was set to detect extended- spectrum ...
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A common tendency for phylogenetic overdispersion in mammalian assemblages
... Community phylogenetic studies can be strongly dependent on the spatial scale of the species pool (Swenson et ...Assemblage phylogenetic structure is calculated relative to that of the species pool so it ...
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Refuting phylogenetic relationships
... with phylogenetic information recorded in molecular markers is indeed often a major ...given phylogenetic question [5]. In addi- tion, the phylogenetic signal is generally eroded by muta- tional ...
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PubMedCentral-PMC4817674.pdf
... expected phylogenetic diversity assuming random sampling for each ...expected phylogenetic diversity for each age group while dashed lines represent 95% confidence ...
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Student Background Personal Background & Learning Objectives
... Technical skills include proficiency in all areas of Enterprise Architecture as well as core competencies in business process analysis/improvement, strategic planning, web development,[r] ...
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Phylogenetic Grammar Induction
... We present an approach to multilin- gual grammar induction that exploits a phylogeny-structured model of parameter drift. Our method does not require any translated texts or token-level alignments. Instead, the ...
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Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
... related organisms together that are distinct from other groups. DNA-DNA hybridization (DDH) is the traditional “gold stan- dard” of circumscribing a bacterial species, as this method pro- vides an assessment of the ...
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Consistency of the Neighbor-Net Algorithm
... conflicting phylogenetic signals supported by the data, Neighbor-Net can represent this conflict ...detailed phylogenetic analyses and specialized biochemical meth- ods ...
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Comparative Biochemical Characterization of L-Asparaginases from Four Species of Lactic Acid Bacteria
... and phylogenetic data from the KEGG. Phylogenetic analysis using the amino acid sequences of ASNases from the selected LAB strains was performed using the KEGG databases (Figure ...the phylogenetic ...
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