phylogenetic diversity
Genetic and Phylogenetic Diversity of Escherichia coli Strains Collected From Fecal Specimens of Patients Admitted to Zabol Hospitals
... Further, the RAPD method was employed to study the genetic difference of E. coli strains, which is a highly reliable and accurate technique in classifying and determining the phylogenetic diversity of ...
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Genotype Imputation Reference Panel Selection Using Maximal Phylogenetic Diversity
... Comparable methods have been suggested by Pasaniuc et al. (2010) and Kang and Marjoram (2012). Pasaniuc et al. (2010) select an imputation template from an external data set based on similarity between haplotypes in the ...
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Continental scale patterns and predictors of fern richness and phylogenetic diversity
... In an earlier study, fern richness across Australia was docu- mented at the species scale and using a dataset approximately half the size of the present study (Bickford and Laffan, 2006). Differences in the datasets are ...
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Spatial distribution pattern of taxonomic and phylogenetic diversity of woody flora in Andaman and Nicobar Islands, India
... and phylogenetic hypotheses for re- corded native woody plants (Additional file 1: Figure S1) to: 1) describe spatial pattern of richness, taxo- nomic and phylogenetic diversity 2) test whether there ...
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Tropical secondary forest regeneration conserves high levels of avian phylogenetic diversity
... In this study, we use fi eld data from the Chocó-Andes of Colombia, a zone straddling two of the most highly threatened hotspots of global biodiversity (Myers et al., 2000), to examine the extent to which phylo- genetic ...
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Phylogenetic diversity and genotypic complexity of H1N1 subtype swine influenza viruses isolated in Mainland China
... the phylogenetic diversity and complexity also existed in H1N1 SIVs in mainland ...its diversity and complexity was still inadequate, and had not attracted much ...
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Phylogenetic Diversity of Koala Retrovirus within a Wild Koala Population
... genetic diversity has been conducted primarily on KoRV in captive koalas housed in zoos in Japan, the United States, and ...genetic diversity in samples collected from 18 wild koalas from southeast ...
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Panorama phylogenetic diversity and distribution of type A influenza viruses based on their six internal gene sequences
... types, and so their representatives were selected with little consideration of subtype. On the other hand, most line- ages or sublineages of human, swine or equine influenza viruses are of limited HA or NA subtypes, and ...
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Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages
... evolutionary diversity is rarely considered in policy and manage- ment ...by phylogenetic diversity (PD) or the length of the shared pathway on a phylogeny represented by a set of taxa ...
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Quantifying phylogenetic beta diversity: distinguishing between 'true' turnover of lineages and phylogenetic diversity gradients
... beta diversity PBD) has been increasingly explored by ecologists and biogeographers to assess the relative roles of ecological and evolutionary processes in structuring natural ...of phylogenetic turnover ...
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Antifungal Drug Susceptibility and Phylogenetic Diversity among Cryptococcus Isolates from Dogs and Cats in North America
... genetic diversity compared with other Cryptococcus molecular types and could be di- vided into two major ...reflect phylogenetic diversity in this ...
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Phylogenetic diversity of Amazonian tree communities
... species diversity is due to recently radiated spe- cies-rich genera (Gentry, 1982) such as Inga (Richardson et ...short phylogenetic branches such as those within these genera do not greatly increase PD ...
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Phylogenetic diversity of Amazonian tree communities
... of phylogenetic diversity than ...of phylogenetic diversity for conservation priori- ...lineage diversity in ...lineage diversity than expected given their species ...
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Prioritizing phylogenetic diversity captures functional diversity unreliably
... logic, phylogenetic diversity has formed the basis of global conservation schemes, notably the EDGE of exis- tence program 18 has been used by restoration biologists 19 and has been widely embraced by ...
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Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008
... sults of recent phylogenetic analysis suggest V. cholerae O1 ac- quired SXT/R391 ICE sometime between 1978 and 1984, before its discovery in V. cholerae O139, and it is hypothesized that it provides a selective ...
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Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae
... extant diversity of Acanthaceae in order to provide a set of orthologous low‐copy nuclear genes and assess their utility for reconstructing phylogenetic relationships within this group of ...potential ...
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Molecular Phylogenetic Diversity of Dermatologic and Other Human Pathogenic Fusarial Isolates from Hospitals in Northern and Central Italy
... schemes developed for human pathogenic species such as As- pergillus fumigatus (6) and Candida albicans (29), the three- locus FSSC typing scheme was developed primarily to identify species within FSSC clade 3, within ...
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Molecular Phylogenetic Diversity, Multilocus Haplotype Nomenclature, and In Vitro Antifungal Resistance within the Fusarium solani Species Complex
... all phylogenetic analyses, the root of the out-group joined the tree with the plant-associated clades 1 and 2, with 2 and 11 species, respectively, always forming the two most basal branches within the FSSC ...
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Culturable heterotrophic bacteria from the marine sponge Dendrilla nigra: isolation and phylogenetic diversity of actinobacteria
... Culturable bacterial community of habitat water was com- pared with cultured bacteria from brittle star and host sponge. Based on the analysis, host speciWc bacteria and ecotypes of sponge-associated cultured bacteria ...
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ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
... unreliable phylogenetic trees, which is problematic because phylogenetic information is useful both for taxonomic placement of unknown sequences and for phylogenetic diversity ...ample, ...
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