Population phylogenetic trees using microsatellite DNA
Empirical Tests of the Reliability of Phylogenetic Trees Constructed With Microsatellite DNA
... for trees similar to ours, at least 30 loci with a minimum of 15 individuals are required when D A distance is ...ECAUSE microsatellite DNA loci or short tandem repeat (STR) loci are highly ...
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Genetic Distances and Reconstruction of Phylogenetic Trees From Microsatellite DNA
... Means and sampling errors of distance measures: The ef- ficiency of constructing phylogenetic trees by means of genetic distances depends on the linear relationship with[r] ...
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A population genetic analysis of the New Zealand spotty (Notolabrus celidotus) using mitochondrial DNA and microsatellite DNA markers
... duration! (PLD),! since! an! organism! that! spends! a! longer! period! of! time! in! the! plankton!will!have!a!greater!chance!of!being!dispersed!further!(Mora!et!al!2012;! ...
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A Study of phylogenetic trees versus networks to objectively identify haplogroups in mitochondrial dna
... of DNA, phylogenetics has played an important ...a phylogenetic tree, illustrating the relationships and common ancestors of the ...a phylogenetic tree is shown in Figure ...relationships. ...
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Microsatellite DNA markers in Shorea platyclados (Dipterocarpaceae): genetic diversity, size homoplasy and mother trees
... of microsatellite loci greatly enhances the effectiveness of this marker ...and population structure of trees in diverse tropical ...six microsatellite loci, originally developed in a ...
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Genetic variation and population structure in Fraser fir (Abies fraseri): a microsatellite assessment of young trees
... many trees as possible could be sampled and were spaced at least 50 m apart to reduce the chance of collecting from half-sibling ...seedlings. Microsatellite population ge- netic statistics were ...
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A Simulation Approach for Change-Points on Phylogenetic Trees.
... simulated DNA data sets. Within each data set, the DNA sequences shared a common ancestral binary tree with known topology, unknown sequence states at ancestral nodes, and unknown substitution rates and ...
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Phylogenetic Assessment of Some Species of Crocus Genus Using DNA Barcoding
... level using the rbcL and trnH-psbA barcodes at the inter-species ...the phylogenetic relationships among species were not well resolved when the chloroplast region was analyzed ...alone. Phylogenetic ...
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New methods for inferring, assessing, and using phylogenetic trees from genomic and microbiome data
... Insects represent a species-rich lineage of organisms with generally small body size and can be challenging for production of high-quality phylogenomic data due to the difficulty of obtaining sufficient tissue (and thus ...
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Inferring epidemic contact structure from phylogenetic trees
... consequently using networks to model such contact structure continues to gain interest in ...mixing. Using a phylogeny from the Swiss HIV epidemic, we show that this epidemic has a significantly more ...
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Inferring epidemic contact structure from phylogenetic trees.
... consequently using networks to model such contact structure continues to gain interest in ...mixing. Using a phylogeny from the Swiss HIV epidemic, we show that this epidemic has a significantly more ...
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Using Treemaps to Visualize Phylogenetic Trees,
... Unfortunately, phylogenetic inference under elaborate criteria such as Maxi- mum Parsimony [ 10 ] (MP) or Maximum Likelihood [ 9 ] (ML) is an NP-complete 1 problem [ 7 ] [ 4 ...evolutionary trees of up to ...
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Phylogenetic Trees
... The tropical Collectors (Bates, Bruce and Wallace), 2009 Différents matériaux de rangement, contenants, sacs, batons, cruches et sable. Dimensions variables Pièce unique[r] ...
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OPERADS AND PHYLOGENETIC TREES
... We note that by the last item in the definition of a metric n-tree there are no 0-trees, and there is exactly one 1-tree, namely the trivial tree with its unique edge labelled by zero. Billera, Holmes and Vogtmann ...
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The Shapley Value of Phylogenetic Trees
... arXiv:q-bio/0506034v2 [q-bio.QM] 28 Aug 2007 CLAUS-JOCHEN HAAKE 1 , AKEMI KASHIWADA 2 ,∗ , AND FRANCIS EDWARD SU 2 ,∗∗ revised, Aug 2007 Abstract. Every weighted tree corresponds naturally to a cooperative game that we ...
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The Shapley value of phylogenetic trees
... OF PHYLOGENETIC TREES CLAUS-JOCHEN HAAKE 1 , AKEMI KASHIWADA 2,∗ , AND FRANCIS EDWARD SU 2,∗∗ ...of phylogenetic trees, the leaves are species and this assignment captures the diversity ...
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Phylogenetic Trees Made Easy
... Chapter 6 • Neighbor Joining Trees 69 Using MEGA 5 to Estimate a Neighbor Joining Tree 69 Learn More about PhyLogenetic treeS 70. Determine the suitability of the data for a Neighbor [r] ...
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The space of ultrametric phylogenetic trees
... for phylogenetic applications, and particularly for summarising posterior samples by a point ...of trees the shortest path traverses a star-tree no matter what the branch lengths of the trees ...
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Confidence procedures for phylogenetic trees
... of trees), while the y-coordinate indicates the length of the branch separating the Human-Chimp- Gorilla clade from the remaining mammals (supported by 81% of ...
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On Distances between Phylogenetic Trees
... The distance measure adopted is based on the difference in the partitions of the leaves induced by the edges in both trees, and has the drawback of being somewhat inse[r] ...
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