Primary structure and predicted protein parameters
TASSER_WT: A Protein Structure Prediction Algorithm with Accurate Predicted Contact Restraints for Difficult Protein Targets
... native structure, even though the sequence alignments are of moderate to poor ...The predicted contacts plus the template alignments provided by PROSPECTOR_4 are implemented into a new structure ...
10
CiteSeerX — Predicting Protein-Protein Interactions From Primary Structure
... the structure, interactions and functions of all proteins within cells and ...the protein level, ultimately leading to a better un- derstanding of disease mechanisms and suggesting new means for ...can ...
6
Protein docking with predicted constraints
... defined structure and were selected for playing important roles in the biochemistry of the ...the structure of the complexes formed by these protein interactions is a fundamental part not only of ...
8
Protein Primary Structure of the Vaccinia Virion at Increased Resolution
... to protein abundance in the virion preparation, with higher abundance allowing the detection of more weakly ionizing modified peptides or sites with lower ...structural protein P4b had one of the highest ...
15
Benchmarking of TASSER_2.0: An Improved Protein Structure Prediction Algorithm with More Accurate Predicted Contact Restraints
... accurate predicted side-chain restraints obtained from the composite-sequence contact prediction ...improves protein structure prediction quality especially for the more difficult targets; it also ...
9
Coronavirus Particle Assembly: Primary Structure Requirements of the Membrane Protein
... viral protein expression, that render the whole virus more tolerant to mutational changes that are dev- astating in the VLP ...M protein carboxy terminus in the virion, as in the VLP system, appeared to ...
13
Prediction of protein-protein interactions from primary structure using a Random Forest classifier
... of protein structures that has enabled us to use the Random Forest non-linear classificator to develop a method for prediction of interacting residues from the protein primary ...of ...
35
The development of machine learning based software for predicting protein-protein interactions and protein function from protein primary structure
... non-interacting protein pairs, researchers create an artificial negative protein interaction dataset for Saccharomyces cerevisiae by randomly generating protein pairs from this organism (Bock and ...
159
Anatomy of the herpes simplex virus 1 strain F glycoprotein B gene: primary sequence and predicted protein structure of the wild type and of monoclonal antibody-resistant mutants.
... In this paper we report the nucleotide sequence and predicted amino acid sequence of glycoprotein B of herpes simplex virus 1 strain F and the amino acid substitutions in the domains of [r] ...
11
Novel mutation predicted to disrupt SGOL1 protein function
... mRNA simulation was performed to investigate the effect of mutation over translational efficiency of the SGOL1 gene. Ma- jor loss in free energy and 3D conformation were observed. The mutant conformation of 3rd exon was ...
7
Scoring docking conformations using predicted protein interfaces
... then predicted using an MSA of homologues from the most reliable available zone ...using Structure-based-MSA (S-MSA) in IBIS ...and structure conservation scores to detect potential binding ...the ...
16
A Predicted Mannoprotein Participates in Cryptococcus gattii Capsular Structure
... the protein sequence irrespective of posttranslational modifications (PTMs) revealed by Western blot analysis is evidence that Krp1 could elicit an immune ...
17
Solubility Temperature Dependence Predicted from 2D Structure
... from primary publications for 354 molecules, with measurements based on the shake-flask (traditional and various miniaturized variants) and two potentiometric (DTT and CheqSol) methods, as described elsewhere ...
47
Avian reovirus L2 genome segment sequences and predicted structure/function of the encoded RNA dependent RNA polymerase protein
... were predicted to encode λB RdRp proteins 1259 amino acids in ...RdRp protein the most highly conserved of currently known orthoreovirus proteins, and there was ~28% identity between ARV λB and homologous ...
11
Hepatitis B virus nucleocapsid assembly: primary structure requirements in the core protein.
... coli, i.e., in the absence of the correct genomic RNA and HBV P-gene products, is correlated with the presence of at least part of the highly basic C terminus; (iv) the packaged nucleic [r] ...
12
An algorithm to parse segment packing in predicted protein contact maps
... secondary structure can co-exist in the same protein and although this does not, in principle, affect the analysis of their packing, β -strands are roughly double the length of an α -helix with the same ...
12
Protein structure prediction and structure-based protein function annotation
... the predicted protein models relies on the accuracy of the structure prediction 40 ...the protein structure is ...topology, predicted using either ab initio approaches or based ...
141
Purification, primary structure, bacterial expression and subcellular distribution of an oocyte-specific protein in Xenopus
... The hybridization pattern of R1 was identical to the pattern seen when hybridizing with the 3’ and 5’ cDNA species (indicated by arrow). Sequencing strategy for the PlOO cD[r] ...
11
The Fusion Protein Specificity of the Parainfluenza Virus Hemagglutinin-Neuraminidase Protein Is Not Solely Defined by the Primary Structure of Its Stalk Domain
... F protein, designated ...HN protein and induced extensive cell-cell fusion, but not by the PIV5 HN ...HN protein, CH95-571, by replacing the cytoplasmic/transmembrane domains and the stalk domain ...
14
Predicted and measured soil retention curve parameters in Lombardy region north of Italy
... water retention functions characterization of the concerned area. These functions jointly are the famous soil hydraulic properties ( Klute & Dirksen, 1986 ). The soil water retention curve can be described as the re- ...
8