protein 3D structure prediction
Molecular cloning, phylogenetic analysis and structure prediction Of amt1 from azolla anabaena azollae symbiotic system
... and protein sequences that are aimed at inferring the molecular evolutionary patterns of genes, genomes, and species over time (Kumar et ...A protein structure can be predicted from the amino acid ...
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In Silico Analysis Brucella OMPs and CagA for Expansion of a Subunit Vaccine Candidate Versus Brucellosis
... immunogenic protein of Helicobacter ...the 3D structure of the protein, modeling, prediction of secondary and tertiary structure, immunogenicity, allergenic sites and antigenic ...
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Structure prediction and analysis of Human Dopamine Receptor-1
... length 3D model of human dopamine receptor-1 ...for 3D structure prediction of human dopamine receptor-1 (DRD1) protein, predicted structure for approximately 322 residues ...for ...
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IN SILICO CHARACTERIZATION OF GlmU ANTIGENIC MYCOBACTERIUM TUBERCULOSIS PROTEIN
... glmU protein is essential in Mycobacterium tuberculosis, being required for optimal bacterial ...primary protein sequence analysis was done using protparam tool and secondary structure ...
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Homology Modeling and Conformational Epitope Prediction of Envelope Protein of Alkhumra Haemorrhagic Fever Virus
... about protein 3D structures in silico, X-ray crystallography and NMR are undoubtedly the first and best choices to get such ...a 3D template chosen by virtue of having the highest sequence identity ...
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A knowledge-based approach to protein structure prediction
... for protein fold ...better prediction accuracy and helped in increasing the fold ...(Hierarchical Protein Fold Prediction) outperforms other available methods of protein fold ...
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Structure-based Prediction of Protein-protein Interaction Networks across Proteomes
... by protein-protein interactions, from signal transduction in cellular networks to forming molecular machines like ribosomes, or from catalyzing enzymatic reaction to transcription regulation ...characterize ...
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Protein secondary structure prediction with classifier fusion
... a protein is a hard, time consuming and costly ...its 3D structure, therefore understanding the structure of a protein is crucial in function ...for protein structure ...
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Prediction of RNA 3D Structure
... Traditionally RNA’s bbiological role is transcription and translation. Beside this, RNA molecules play many important roles in many cellular processes, such as carrying genetic information, participating in the ...
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Protein-x of hepatitis B virus in interaction with CCAAT/enhancer-binding protein α (C/EBPα) - an in silico analysis approach
... modeling structure begins with an alignment of the sequence to be modeled (target) with a related known 3D structure ...align protein-x sequence with the sequence of the porcine reproductive ...
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Application of Bioinformatics on Protein Structure Prediction
... of 3D spatial structure prediction are homology modeling, fold type recognition and ab initio ...useful protein structure prediction methods, which can be used to explain the ...
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Prediction of Protein Structure using Parallel Genetic Algorithm
... surroundings. Protein structure prediction constitutes its importance which generally lies in its wide presence in living organisms, usage of the computational protein structure ...
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Insilico structure prediction of saer protein from staphylococcus aureus
... for protein that is related to atleast one known protein structure (Browne, 1969, Blundell, 1987, Anchez, 1997, Bajorath, 1994, Johnson, 1994, Mart, ...of protein refers to constructing an ...
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Antigenic heterogeneity of capsid protein VP1 in foot-and-mouth disease virus (FMDV) serotype Asia1
... epitopes were first predicted by BCPREDS and BepiPred, but only those epitopes that were fully or mostly overlapped with the Disco Tope and ElliPro prediction were chosen as the final epitope candidates. Thus, six ...
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Protein structure prediction with the 3D-HP side-chain model using a master–slave parallel genetic algorithm
... the Protein Structure Prediction (PSP) problem ...a protein is frequently unfeasible, even with the most powerful compu- tational ...the protein structure have been ...the ...
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Stochastic Fractal Search Algorithm for 3D Protein Structure Prediction
... The better the algorithm is, the smaller the energy value is and the more stable the protein is. As can be seen from Table 1, SFS can obtain lower energy values than other algorithms unless the length 13. For ...
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Artificial Neural Network aided Protein Structure Prediction
... Every protein has a unique linear sequence of amino acids, also called a ...the protein to fold up into a unique ...3-D structure. The tertiary structure is the 3D fold of the ...
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Homology modeling a fast tool for drug discovery: Current perspectives
... of protein-ligand complexes; in which the protein molecules act energetically in the course of ...of protein-ligand interaction will be very important for structure based drug ...of 3D ...
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Analysis of an Immune Algorithm for Protein Structure Prediction
... local structure for a larger number of ...local structure are not rapidly disposed of dur- ing the retirement process, hindering efficiency as a conse- ...
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ROSEFW RF: the winner algorithm for the ECBDL’14 big data competition: an extremely imbalanced big data bioinformatics problem
... The application of data mining and machine learning techniques to bio- logical and biomedicine data continues to be an ubiquitous research theme in current bioinformatics. The rapid advances in biotechnology are allowing ...
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