Sequence alignment of the three isoform sequences
Inferring phylogenies of evolving sequences without multiple sequence alignment
... of alignment-free methods in phylogenetics reflects a model-free, purely informatic exercise, or alternatively can capture homology signal inherent in evolving sequences 42–44 ...The alignment-free ...
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Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
... Nevertheless, the results of our computational experiments presented in Sect. 3 show that this approach yields high-quality structural alignments. In the pairwise case, our graph-based model is competitive with ...
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Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
... RNA sequences evolve more rapidly than the structure they are forming, because their evolutionary behavior fol- lows the structure-function paradigm: RNA molecules with different sequences but same or ...
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A Step Towards Sequence-to-Sequence Alignment
... temporal alignment is not limited to motion information ...two sequences of several hundred frames ...both sequences before spatio-temporal align- ...
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Pairwise Sequence Alignment
... a) A continuous main diagonal shows perfect similarity for symbols with the same indices. b) Parallels to the main diagonal indicate repeated regions in the same reading direction on different parts of the ...
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An enhanced RNA alignment benchmark for sequence alignment programs
... (fast) sequence alignment programs using new or optimized program ...of alignment programs to multiple "sequence" alignment programs because – at least for the computing resources ...
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An enhanced RNA alignment benchmark for sequence alignment programs
... (fast) sequence alignment programs using new or optimized program ...of alignment programs to multiple "sequence" alignment programs because – at least for the computing resources ...
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DNA Sequence Alignment Analysis
... Click on the box by any set you want to omit, and the tick mark should go away. This sequence (or set of sequences) will no longer be included in analyses. To reverse this decision, click to get the tick ...
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Efficient Alignment of Very Long Sequences
... We emphasize that the described cache model is a very simplified model. In practice, modern computers commonly have two or three levels of cache and em- ploy sophisticated adaptive cache replacement strategies ...
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Optimization of sequence alignment for simple sequence repeat regions
... Sequence alignment involves the identification of the correct location of INDELS that have happened since their divergence from a common ...true alignment reflects the evolutionary relationships ...
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Minimum-risk sequence alignment for the alignment and recognition of action videos
... Temporal alignment of videos is an important requirement of tasks such as video compar- ison, analysis and ...temporal alignment are the human actions depicted in the ...well-established alignment ...
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Fractal MapReduce decomposition of sequence alignment
... aligning sequences. This was demonstrated by aligning sequences of various lengths by the positions of their longest identical ...established alignment algorithms for local/global, and with/without ...
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Sequence Alignment/Map Format Specification
... In a padded SAM, alignments and coordinates are described with respect to the padded reference se- quence. Unlike traditional padded representations like the ACE file format where pads/gaps are recorded in reads using ...
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Faster and efficient algorithm for sequence alignment
... between sequences. The sequences are arranged in 2 dimensional matrix and a dot is placed in any region of ...large sequences over 1000 residues. Also, sequences of unknown similarity can be ...
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Bayesian coestimation of phylogeny and sequence alignment
... small, alignment is generally straightforward, and genealogical inference from a fixed alignment is well- understood ...when sequences are hard to ...of alignment and phylogeny often refer to ...
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A RANDOMIZED ALGORITHM FOR FAST SEQUENCE ALIGNMENT
... Multiple Sequence Alignment, Randomized Algorithms, Sequence Analysis ...since sequence alignment gained significance, a large number of algorithms have been ...pairwise sequence ...
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Heuristics for multiobjective multiple sequence alignment
... the three starting alignments on the performance of ...the three starting ...of sequences; columns Min and Max correspond to the length of the smallest and the largest sequence, ...of ...
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Improving the quality of multiple sequence alignment
... multiple alignment problem is to bring similar regions from different sequences as closely together as possible, with applications in diverse types of biosequence analysis (Taylor, 1987; Carillo and Lipman, ...
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T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
... considered sequences are not directly integrated in a multiple sequence ...multiple sequence align- ment using a position specific scoring scheme derived from the library (consistency-based ...
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T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
... considered sequences are not directly integrated in a multiple sequence ...multiple sequence align- ment using a position specific scoring scheme derived from the library (consistency-based ...
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